SMTL ID : 1wp4.1

Structure of TT368 protein from Thermus Thermophilus HB8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: S.117, G.118, G.119, K.165, N.168, N.169 Chain B: S.204 Ligands: NDP.2 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.118, A:G.119, A:N.168, B:S.204, B:S.204 Water bridges: A:K.165, A:N.169 Salt bridges: A:K.165 SO4.3: 9 residues within 4Å: Chain A: S.204 Chain B: V.116, S.117, G.118, G.119, K.165, N.168, N.169 Ligands: NDP.4 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.117, B:G.118, B:G.119, B:N.168, A:S.204 Water bridges: B:K.165, B:N.169 Salt bridges: B:K.165 SO4.5: 9 residues within 4Å: Chain C: V.116, S.117, G.118, G.119, K.165, N.168, N.169 Chain D: S.204 Ligands: NDP.6 8 PLIP interactions: 7 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:S.117, C:G.118, C:G.119, C:N.168, D:S.204 Water bridges: C:K.165, C:N.169 Salt bridges: C:K.165 SO4.7: 6 residues within 4Å: Chain D: V.116, S.117, G.118, G.119, K.165 Ligands: NDP.8 9 PLIP interactions: 7 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:G.118, D:G.119 Water bridges: D:S.117, D:K.165, D:N.169, D:N.169, C:S.204, C:S.204 Salt bridges: D:K.165

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.2: 27 residues within 4Å: Chain A: G.8, L.9, G.10, A.11, M.12, W.29, N.30, R.31, T.32, K.35, C.62, L.63, P.64, E.68, E.71, T.90, S.91, V.116, G.119, T.120, K.165, T.226, F.227, L.231, K.234, D.235 Ligands: SO4.1 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:V.116, A:F.227 Hydrogen bonds: A:L.9, A:A.11, A:M.12, A:N.30, A:N.30, A:R.31, A:T.32, A:T.32, A:L.63, A:E.71, A:S.91, A:S.91, A:T.120, A:T.226, A:K.234 Water bridges: A:G.10, A:G.13, A:R.31, A:R.31, A:A.228 Salt bridges: A:R.31, A:K.35 pi-Cation interactions: A:R.31 NDP.4: 25 residues within 4Å: Chain B: G.8, L.9, G.10, A.11, M.12, N.30, R.31, T.32, C.62, L.63, P.64, E.68, E.71, T.90, S.91, V.116, G.119, T.120, K.165, T.226, F.227, L.231, K.234, D.235 Ligands: SO4.3 26 PLIP interactions: 26 interactions with chain B Hydrophobic interactions: B:V.116, B:F.227 Hydrogen bonds: B:L.9, B:A.11, B:M.12, B:N.30, B:N.30, B:R.31, B:T.32, B:L.63, B:E.71, B:S.91, B:S.91, B:T.120, B:T.226, B:K.234 Water bridges: B:G.10, B:G.13, B:R.31, B:R.31, B:R.31, B:R.31, B:T.32, B:A.228 Salt bridges: B:R.31 pi-Cation interactions: B:R.31 NDP.6: 27 residues within 4Å: Chain C: G.8, L.9, G.10, A.11, M.12, W.29, N.30, R.31, T.32, K.35, C.62, L.63, P.64, E.68, E.71, T.90, S.91, V.116, G.119, T.120, K.165, T.226, F.227, L.231, K.234, D.235 Ligands: SO4.5 29 PLIP interactions: 29 interactions with chain C Hydrophobic interactions: C:V.116, C:F.227 Hydrogen bonds: C:L.9, C:A.11, C:M.12, C:N.30, C:N.30, C:R.31, C:T.32, C:L.63, C:E.71, C:S.91, C:S.91, C:T.120, C:T.226, C:K.234 Water bridges: C:G.10, C:G.13, C:R.31, C:R.31, C:R.31, C:R.31, C:T.32, C:E.68, C:E.68, C:E.68, C:A.228 Salt bridges: C:R.31 pi-Cation interactions: C:R.31 NDP.8: 23 residues within 4Å: Chain D: G.8, L.9, G.10, A.11, M.12, W.29, N.30, R.31, T.32, C.62, L.63, P.64, E.68, E.71, T.90, S.91, V.116, G.119, K.165, T.226, F.227, K.234 Ligands: SO4.7 20 PLIP interactions: 20 interactions with chain D Hydrogen bonds: D:L.9, D:A.11, D:M.12, D:N.30, D:N.30, D:T.32, D:T.32, D:L.63, D:E.71, D:S.91, D:S.91, D:K.234, D:K.234 Water bridges: D:G.13, D:R.31, D:R.31, D:T.120, D:T.226 Salt bridges: D:R.31 pi-Cation interactions: D:R.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lokanath, N.K. et al., Crystal Structure of Novel NADP-dependent 3-Hydroxyisobutyrate Dehydrogenase from Thermus thermophilus HB8. J.Mol.Biol. (2005)

Release Date

2005-08-30

Peptides

3-hydroxyisobutyrate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-hydroxyisobutyrate dehydrogenase

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