SMTL ID : 1wq8.2 (1 other biounit)

Crystal structure of Vammin, a VEGF-F from a snake venom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-octamer

Ligands

8 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 5 residues within 4Å: Chain A: G.47, C.48 Chain G: L.20, P.22, C.39 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain G Water bridges: A:G.47 Hydrogen bonds: G:L.20 TRS.2: 5 residues within 4Å: Chain B: G.47, C.48 Chain H: L.20, P.22, C.39 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain B Hydrogen bonds: H:L.20 Water bridges: B:G.47 TRS.3: 5 residues within 4Å: Chain C: G.47, C.48 Chain E: L.20, P.22, C.39 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:L.20 Water bridges: C:G.47 TRS.4: 5 residues within 4Å: Chain D: G.47, C.48 Chain F: L.20, P.22, C.39 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D Hydrogen bonds: F:L.20 Water bridges: D:G.47 TRS.5: 5 residues within 4Å: Chain C: L.20, P.22, C.39 Chain E: G.47, C.48 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Water bridges: E:G.47 Hydrogen bonds: C:L.20 TRS.6: 5 residues within 4Å: Chain D: L.20, P.22, C.39 Chain F: G.47, C.48 2 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D Water bridges: F:G.47 Hydrogen bonds: D:L.20 TRS.7: 5 residues within 4Å: Chain A: L.20, P.22, C.39 Chain G: G.47, C.48 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain G Hydrogen bonds: A:L.20 Water bridges: G:G.47 TRS.8: 5 residues within 4Å: Chain B: L.20, P.22, C.39 Chain H: G.47, C.48 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain B Water bridges: H:G.47 Hydrogen bonds: B:L.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Suto, K. et al., Crystal structures of novel vascular endothelial growth factors (VEGF) from snake venoms: insight into selective VEGF binding to kinase insert domain-containing receptor but not to fms-like tyrosine kinase-1. J.Biol.Chem. (2005)

Release Date

2004-12-07

Peptides

Vascular endothelial growth factor toxin: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

Vascular endothelial growth factor toxin

Related Entries With Identical Sequence