SMTL ID : 1wsp.1

Crystal structure of axin dix domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

9 x HG: MERCURY (II) ION(Non-covalent)(Non-functional Binders)

HG.1: 2 residues within 4Å: Chain A: C.2, S.4 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.2, H2O.2 HG.2: 4 residues within 4Å: Chain A: F.11, C.12, Y.42 Ligands: BEZ.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.12 HG.3: 2 residues within 4Å: Chain A: D.54, C.55 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.55 HG.5: 2 residues within 4Å: Chain B: C.2, S.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.2 HG.6: 3 residues within 4Å: Chain B: F.11, C.12, Y.42 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.12 HG.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) HG.8: 3 residues within 4Å: Chain C: F.11, C.12, Y.42 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.12 HG.9: 2 residues within 4Å: Chain C: C.2, S.4 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.2 HG.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.4: 4 residues within 4Å: Chain A: F.11, K.38, Y.42 Ligands: HG.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.11, A:K.38 Salt bridges: A:K.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shibata, N. et al., Crystal structure of axin dix domain. to be published

Release Date

2006-02-14

Peptides

Axin 1 protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Axin 1 protein