SMTL ID : 1wsv.1

Crystal Structure of Human T-protein of Glycine Cleavage System

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: H.214 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.214 SO4.2: 1 residues within 4Å: Chain A: R.172 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.172, A:R.172, A:R.172, A:R.172 Salt bridges: A:R.172 SO4.3: 3 residues within 4Å: Chain A: H.37, R.303, P.324 5 PLIP interactions: 5 interactions with chain A Water bridges: A:H.37, A:R.303, A:R.303 Salt bridges: A:H.37, A:R.303 SO4.4: 3 residues within 4Å: Chain A: P.301, R.303, R.353 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.353 Salt bridges: A:R.303, A:R.353 SO4.5: 1 residues within 4Å: Chain A: K.278 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.278 SO4.6: 1 residues within 4Å: Chain A: R.287 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.287 SO4.7: 5 residues within 4Å: Chain A: S.259, L.260, S.261, W.262, R.291 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.259, A:S.261, A:S.261, A:W.262 Water bridges: A:R.291 Salt bridges: A:R.291 SO4.8: 2 residues within 4Å: Chain A: H.17, R.34 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.17 Salt bridges: A:H.17, A:R.34 SO4.10: 5 residues within 4Å: Chain B: S.259, L.260, S.261, W.262, R.291 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.259, B:S.261, B:S.261, B:W.262 Water bridges: B:R.291, B:R.291 Salt bridges: B:R.291 SO4.11: 3 residues within 4Å: Chain B: P.301, R.303, R.353 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.303, B:R.353 SO4.12: 3 residues within 4Å: Chain B: H.37, R.303, P.324 6 PLIP interactions: 6 interactions with chain B Water bridges: B:R.303, B:R.303, B:R.303, B:R.303 Salt bridges: B:H.37, B:R.303

2 x THH: N-[4-({[(6S)-2-AMINO-4-HYDROXY-5-METHYL-5,6,7,8-TETRAHYDROPTERIDIN-6-YL]METHYL}AMINO)BENZOYL]-L-GLUTAMIC ACID(Non-covalent)

THH.9: 17 residues within 4Å: Chain A: M.56, T.87, L.88, D.101, L.102, I.103, V.115, N.117, F.176, M.177, G.196, Y.197, E.204, R.233, L.242, W.262, Y.371 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.88, A:F.176, A:Y.197, A:Y.197, A:L.242, A:W.262 Hydrogen bonds: A:L.88, A:I.103, A:V.115, A:R.233, A:Y.371 Water bridges: A:D.101, A:N.117, A:E.204, A:E.204, A:R.233, A:Y.371 Salt bridges: A:E.204 THH.13: 19 residues within 4Å: Chain B: M.56, T.87, L.88, D.101, L.102, I.103, V.115, S.116, N.117, F.176, M.177, C.195, G.196, Y.197, E.204, R.233, L.242, W.262, Y.371 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:L.88, B:I.103, B:F.176, B:Y.197, B:Y.197, B:L.242, B:W.262 Hydrogen bonds: B:T.87, B:L.88, B:I.103, B:V.115, B:R.233, B:Y.371, B:Y.371 Water bridges: B:D.101, B:N.117, B:E.204, B:E.204 Salt bridges: B:E.204

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okamura-Ikeda, K. et al., Crystal Structure of Human T-protein of Glycine Cleavage System at 2.0A Resolution and its Implication for Understanding Non-ketotic Hyperglycinemia. J.Mol.Biol. (2005)

Release Date

2005-08-16

Peptides

Aminomethyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminomethyltransferase

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