SMTL ID : 1wu5.1

Crystal structure of reducing-end-xylose releasing exo-oligoxylanase complexed with xylose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x XYP: beta-D-xylopyranose(Non-covalent)

XYP.1: 11 residues within 4Å: Chain A: D.61, N.64, R.68, E.70, S.262, D.263, R.266, L.318, H.319, Y.359, Y.360 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:D.61, A:D.61, A:N.64, A:R.68, A:E.70, A:S.262, A:R.266 Water bridges: A:D.61, A:R.266, A:R.357, A:R.357, A:Y.360 Salt bridges: A:H.319

1 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 2 residues within 4Å: Chain A: E.27, E.30 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.27, A:E.27, A:E.30

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: E.192, F.193, Y.246, Y.247, D.248 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.192, A:Y.247, A:D.248, A:D.248 Water bridges: A:E.192

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fushinobu, S. et al., Structural Basis for the Specificity of the Reducing End Xylose-releasing Exo-oligoxylanase from Bacillus halodurans C-125. J.Biol.Chem. (2005)

Release Date

2005-02-22

Peptides

xylanase Y: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

xylanase Y

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