SMTL ID : 1wu8.1 (1 other biounit)

Crystal structure of project PH0463 from Pyrococcus horikoshii OT3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

6 x ADN: ADENOSINE(Non-covalent)

ADN.1: 15 residues within 4Å: Chain A: D.7, R.40, H.41, I.67, D.68, P.69, V.71, T.125 Chain B: F.181, N.183, Y.212, V.234, N.235, M.236, G.237 9 PLIP interactions: 4 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:D.7, A:R.40, A:D.68, B:N.183, B:V.234 pi-Cation interactions: A:H.41 Water bridges: B:V.234 pi-Stacking: B:Y.212, B:Y.212 ADN.2: 17 residues within 4Å: Chain B: D.7, F.8, R.40, H.41, V.66, I.67, D.68, P.69, V.71, T.125 Chain C: F.181, N.183, Y.212, V.234, N.235, M.236, G.237 11 PLIP interactions: 6 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:R.40, B:H.41, B:V.66, B:D.68, B:T.125, C:N.183, C:V.234 pi-Cation interactions: B:H.41 Water bridges: C:V.234 pi-Stacking: C:Y.212, C:Y.212 ADN.3: 14 residues within 4Å: Chain A: F.181, N.183, Y.212, V.234, N.235, M.236, G.237 Chain C: R.40, H.41, D.68, P.69, G.70, V.71, T.125 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain C Hydrogen bonds: A:N.183, A:V.234, C:R.40, C:H.41, C:P.69 Water bridges: A:V.234, C:D.68, C:D.68 pi-Stacking: A:Y.212, A:Y.212 pi-Cation interactions: C:H.41 ADN.4: 15 residues within 4Å: Chain D: D.7, R.40, H.41, I.67, D.68, P.69, V.71, T.125 Chain E: F.181, N.183, Y.212, V.234, N.235, M.236, G.237 10 PLIP interactions: 5 interactions with chain D, 5 interactions with chain E Hydrogen bonds: D:D.7, D:R.40, D:H.41, D:D.68, E:N.183, E:V.234 pi-Cation interactions: D:H.41 Water bridges: E:V.234 pi-Stacking: E:Y.212, E:Y.212 ADN.5: 17 residues within 4Å: Chain E: D.7, F.8, R.40, H.41, V.66, I.67, D.68, P.69, V.71, T.125 Chain F: F.181, N.183, Y.212, V.234, N.235, M.236, G.237 12 PLIP interactions: 5 interactions with chain F, 7 interactions with chain E Hydrogen bonds: F:N.183, F:V.234, E:R.40, E:H.41, E:H.41, E:V.66, E:D.68, E:T.125 Water bridges: F:V.234 pi-Stacking: F:Y.212, F:Y.212 pi-Cation interactions: E:H.41 ADN.6: 14 residues within 4Å: Chain D: F.181, N.183, Y.212, V.234, N.235, M.236, G.237 Chain F: R.40, H.41, D.68, P.69, G.70, V.71, T.125 9 PLIP interactions: 4 interactions with chain F, 5 interactions with chain D Hydrogen bonds: F:R.40, F:P.69, D:N.183, D:V.234 Water bridges: F:H.127, D:V.234 pi-Cation interactions: F:H.41 pi-Stacking: D:Y.212, D:Y.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimizu, K. et al., Crystal structure of project ID PH0463 from Pyrococcus horikoshii OT3. To be Published

Release Date

2005-11-29

Peptides

hypothetical protein PH0463: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

hypothetical protein PH0463

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