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SMTL ID : 1wv4.1
X-ray Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in tetragonal crystal form
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.60 Å
Oligo State
homo-dimer
Ligands
2 x
PO4
:
PHOSPHATE ION
(Non-functional Binders)
PO4.1:
3 residues within 4Å:
Chain A:
R.23
,
R.24
,
R.215
2
PLIP interactions
:
2 interactions with chain A
Hydrogen bonds:
A:R.24
Salt bridges:
A:R.215
PO4.3:
4 residues within 4Å:
Chain B:
R.23
,
R.24
,
R.25
,
R.215
4
PLIP interactions
:
4 interactions with chain B
Hydrogen bonds:
B:R.24
,
B:R.24
Salt bridges:
B:R.25
,
B:R.215
2 x
FMN
:
FLAVIN MONONUCLEOTIDE
(Non-covalent)
FMN.2:
17 residues within 4Å:
Chain A:
D.49
,
R.67
,
I.68
,
V.69
,
L.70
,
K.72
,
Y.82
,
T.83
,
S.87
,
R.88
,
K.89
,
W.178
Chain B:
H.106
,
Q.111
,
W.191
,
R.201
,
P.218
20
PLIP interactions
:
14 interactions with chain A
,
6 interactions with chain B
Hydrophobic interactions:
A:I.68
,
A:L.70
,
B:W.191
,
B:W.191
Hydrogen bonds:
A:I.68
,
A:I.68
,
A:L.70
,
A:K.72
,
A:Y.82
,
A:T.83
,
A:R.88
,
A:K.89
,
A:K.89
,
B:Q.111
,
B:W.191
Salt bridges:
A:R.67
,
A:R.88
,
A:K.89
,
B:R.201
Water bridges:
B:R.201
FMN.4:
15 residues within 4Å:
Chain A:
H.106
,
Q.111
,
W.191
,
R.201
,
P.218
Chain B:
D.49
,
R.67
,
I.68
,
V.69
,
L.70
,
Y.82
,
T.83
,
S.87
,
R.88
,
K.89
21
PLIP interactions
:
14 interactions with chain B
,
7 interactions with chain A
Hydrophobic interactions:
B:I.68
,
B:L.70
,
A:H.106
,
A:Q.111
,
A:W.191
,
A:W.191
Hydrogen bonds:
B:I.68
,
B:I.68
,
B:L.70
,
B:Y.82
,
B:T.83
,
B:R.88
,
B:K.89
,
B:K.89
,
A:Q.111
,
A:W.191
Water bridges:
B:Y.82
Salt bridges:
B:R.67
,
B:R.88
,
B:K.89
,
A:R.201
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Safo, M.K. et al., Structure of Escherichia coli pyridoxine 5'-phosphate oxidase in a tetragonal crystal form: insights into the mechanistic pathway of the enzyme. Acta Crystallogr.,Sect.D (2005)
Release Date
2004-12-28
Peptides
Pyridoxamine 5'-phosphate oxidase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Secondary Structure
None
DSSP
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Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
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Pyridoxamine 5'-phosphate oxidase
Related Entries With Identical Sequence
1g76.1
|
1g77.1
|
1g78.1
|
1g79.1
|
1jnw.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
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Resolution
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