SMTL ID : 1wvc.1

alpha-D-glucose-1-phosphate cytidylyltransferase complexed with CTP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

12 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: R.15, D.131, D.236 Ligands: CTP.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.131, A:D.236 MG.3: 2 residues within 4Å: Chain A: R.15 Ligands: CTP.4 No protein-ligand interaction detected (PLIP) MG.5: 4 residues within 4Å: Chain B: R.15, D.131, D.236 Ligands: CTP.8 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.131, B:D.236 MG.7: 2 residues within 4Å: Chain B: R.15 Ligands: CTP.8 No protein-ligand interaction detected (PLIP) MG.9: 4 residues within 4Å: Chain C: R.15, D.131, D.236 Ligands: CTP.12 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.131, C:D.236 MG.11: 2 residues within 4Å: Chain C: R.15 Ligands: CTP.12 No protein-ligand interaction detected (PLIP) MG.13: 4 residues within 4Å: Chain D: R.15, D.131, D.236 Ligands: CTP.16 2 PLIP interactions: 2 interactions with chain D Metal complexes: D:D.131, D:D.236 MG.15: 2 residues within 4Å: Chain D: R.15 Ligands: CTP.16 No protein-ligand interaction detected (PLIP) MG.17: 4 residues within 4Å: Chain E: R.15, D.131, D.236 Ligands: CTP.20 2 PLIP interactions: 2 interactions with chain E Metal complexes: E:D.131, E:D.236 MG.19: 2 residues within 4Å: Chain E: R.15 Ligands: CTP.20 No protein-ligand interaction detected (PLIP) MG.21: 4 residues within 4Å: Chain F: R.15, D.131, D.236 Ligands: CTP.24 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.131, F:D.236 MG.23: 2 residues within 4Å: Chain F: R.15 Ligands: CTP.24 No protein-ligand interaction detected (PLIP)

6 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 1 residues within 4Å: Chain A: H.79 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.79 NI.6: 1 residues within 4Å: Chain B: H.79 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.79 NI.10: 1 residues within 4Å: Chain C: H.79 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.79 NI.14: 1 residues within 4Å: Chain D: H.79 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.79 NI.18: 1 residues within 4Å: Chain E: H.79 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:H.79 NI.22: 1 residues within 4Å: Chain F: H.79 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:H.79

6 x CTP: CYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

CTP.4: 18 residues within 4Å: Chain A: L.8, A.9, G.10, G.11, L.12, G.13, T.14, R.15, K.25, S.106, M.107, R.111, Y.129, G.130, D.131, D.236 Ligands: MG.1, MG.3 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:A.9, A:A.9, A:G.10, A:G.11, A:L.12, A:G.13, A:T.14, A:R.15, A:S.106, A:R.111, A:R.111, A:G.130 Salt bridges: A:R.15, A:R.15, A:K.25, A:K.25, A:K.25 CTP.8: 18 residues within 4Å: Chain B: L.8, A.9, G.10, G.11, L.12, G.13, T.14, R.15, K.25, S.106, M.107, R.111, Y.129, G.130, D.131, D.236 Ligands: MG.5, MG.7 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:A.9, B:A.9, B:G.10, B:G.11, B:L.12, B:G.13, B:T.14, B:R.15, B:S.106, B:R.111, B:R.111, B:G.130 Salt bridges: B:R.15, B:R.15, B:K.25, B:K.25, B:K.25 CTP.12: 18 residues within 4Å: Chain C: L.8, A.9, G.10, G.11, L.12, G.13, T.14, R.15, K.25, S.106, M.107, R.111, Y.129, G.130, D.131, D.236 Ligands: MG.9, MG.11 17 PLIP interactions: 17 interactions with chain C Hydrogen bonds: C:A.9, C:A.9, C:G.10, C:G.11, C:L.12, C:G.13, C:T.14, C:R.15, C:S.106, C:R.111, C:R.111, C:G.130 Salt bridges: C:R.15, C:R.15, C:K.25, C:K.25, C:K.25 CTP.16: 18 residues within 4Å: Chain D: L.8, A.9, G.10, G.11, L.12, G.13, T.14, R.15, K.25, S.106, M.107, R.111, Y.129, G.130, D.131, D.236 Ligands: MG.13, MG.15 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:A.9, D:A.9, D:G.10, D:G.11, D:L.12, D:G.13, D:T.14, D:R.15, D:S.106, D:R.111, D:R.111, D:G.130, D:D.131 Salt bridges: D:R.15, D:R.15, D:K.25, D:K.25, D:K.25 CTP.20: 18 residues within 4Å: Chain E: L.8, A.9, G.10, G.11, L.12, G.13, T.14, R.15, K.25, S.106, M.107, R.111, Y.129, G.130, D.131, D.236 Ligands: MG.17, MG.19 17 PLIP interactions: 17 interactions with chain E Hydrogen bonds: E:A.9, E:A.9, E:G.10, E:G.11, E:L.12, E:G.13, E:T.14, E:R.15, E:S.106, E:R.111, E:R.111, E:G.130 Salt bridges: E:R.15, E:R.15, E:K.25, E:K.25, E:K.25 CTP.24: 18 residues within 4Å: Chain F: L.8, A.9, G.10, G.11, L.12, G.13, T.14, R.15, K.25, S.106, M.107, R.111, Y.129, G.130, D.131, D.236 Ligands: MG.21, MG.23 17 PLIP interactions: 17 interactions with chain F Hydrogen bonds: F:A.9, F:A.9, F:G.10, F:G.11, F:L.12, F:G.13, F:T.14, F:R.15, F:S.106, F:R.111, F:R.111, F:G.130 Salt bridges: F:R.15, F:R.15, F:K.25, F:K.25, F:K.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koropatkin, N.M. et al., Kinetic and structural analysis of alpha-D-Glucose-1-phosphate cytidylyltransferase from Salmonella typhi. J.Biol.Chem. (2005)

Release Date

2005-01-11

Peptides

Glucose-1-phosphate cytidylyltransferase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Glucose-1-phosphate cytidylyltransferase

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