SMTL ID : 1wwk.1

Crystal structure of phosphoglycerate dehydrogenase from Pyrococcus horikoshii OT3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 25 residues within 4Å: Chain A: S.99, V.103, I.148, G.149, F.150, G.151, R.152, I.153, Y.171, D.172, P.173, Y.174, H.203, V.204, P.205, S.209, T.210, T.231, S.232, R.233, D.257, V.258, H.281, G.283, A.284 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:V.103 Hydrogen bonds: A:F.150, A:F.150, A:R.152, A:I.153, A:V.204, A:S.209, A:D.257, A:G.283, A:A.284 Water bridges: A:G.151, A:R.152, A:R.152, A:R.152, A:R.152, A:G.154, A:Y.171, A:L.206, A:R.233 Salt bridges: A:R.152, A:R.152 NAD.2: 25 residues within 4Å: Chain B: V.75, S.99, V.103, G.149, F.150, G.151, R.152, I.153, Y.171, D.172, P.173, Y.174, H.203, V.204, P.205, S.209, T.210, T.231, S.232, R.233, D.257, V.258, H.281, G.283, A.284 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:V.75, B:V.103 Hydrogen bonds: B:F.150, B:F.150, B:R.152, B:I.153, B:V.204, B:S.209, B:D.257, B:A.284 Water bridges: B:G.151, B:R.152, B:R.152, B:R.152, B:R.152, B:R.152, B:G.154, B:R.179, B:L.206, B:S.209 Salt bridges: B:R.152, B:R.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sugahara, M. et al., Crystal structure of phosphoglycerate dehydrogenase from Pyrococcus horikoshii OT3. To be Published

Release Date

2006-01-17

Peptides

phosphoglycerate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

phosphoglycerate dehydrogenase