SMTL ID : 1x01.1

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 in complex with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 14 residues within 4Å: Chain A: G.47, R.48, L.49, R.51, K.52, W.53, E.54, K.100, N.103, D.104, K.111, N.131, P.137, A.140 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:R.48, A:L.49, A:N.50, A:R.51, A:E.54, A:N.103, A:N.103, A:K.111, A:N.131, A:N.131 Water bridges: A:K.100, A:K.100, A:K.111 Salt bridges: A:R.48, A:R.51, A:K.100, A:K.100, A:K.111, A:K.111, A:K.111 pi-Stacking: A:W.53, A:W.53 ATP.3: 15 residues within 4Å: Chain B: G.47, R.48, L.49, R.51, K.52, W.53, E.54, W.61, K.100, D.104, K.111, N.131, P.137, A.140, L.232 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:R.48, B:L.49, B:R.51, B:R.51, B:E.54, B:N.131, B:N.131 Water bridges: B:N.103 Salt bridges: B:R.51, B:K.100, B:K.111, B:K.111 pi-Stacking: B:W.53, B:W.53

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x ACY: ACETIC ACID(Non-functional Binders)

ACY.4: 8 residues within 4Å: Chain B: I.99, K.100, W.101, M.186, I.187, A.204, L.232, F.234 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.101, B:L.232, B:F.234 Hydrogen bonds: B:I.99, B:W.101, B:I.187 ACY.5: 2 residues within 4Å: Chain B: R.212, K.224 4 PLIP interactions: 4 interactions with chain B Water bridges: B:K.224, B:K.224 Salt bridges: B:R.212, B:K.224 ACY.6: 1 residues within 4Å: Chain B: R.233 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Protein biotinylation visualized by a complex structure of biotin protein ligase with a substrate. J.Biol.Chem. (2008)

Release Date

2006-05-23

Peptides

biotin--[acetyl-CoA-carboxylase] ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

biotin--[acetyl-CoA-carboxylase] ligase

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