SMTL ID : 1x08.1

Crystal structure of D26A mutant UPPs in complex with Mg, IPP and FsPP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

4 x FPS: S-[(2E,6E)-3,7,11-TRIMETHYLDODECA-2,6,10-TRIENYL] TRIHYDROGEN THIODIPHOSPHATE(Non-covalent)

FPS.1: 18 residues within 4Å: Chain A: M.25, A.26, G.27, N.28, G.29, R.30, R.39, H.43, G.46, V.50, A.69, N.74, R.77, L.85, A.92, W.221 Ligands: FPS.2, IPE.3 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.50, A:L.85, A:A.92 Hydrogen bonds: A:G.27, A:N.28, A:N.28, A:G.29, A:R.30, A:H.43, A:R.77, A:R.77 Water bridges: A:R.30, A:R.30, A:R.30, A:R.39, A:R.39 Salt bridges: A:R.30 FPS.2: 8 residues within 4Å: Chain A: A.47, V.50, R.51, A.92, L.93, E.96, I.141 Ligands: FPS.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.50, A:R.51, A:R.51, A:E.96, A:I.141 FPS.4: 18 residues within 4Å: Chain B: M.25, A.26, G.27, N.28, G.29, R.30, R.39, H.43, G.46, V.50, A.69, N.74, R.77, L.85, A.92, W.221 Ligands: FPS.5, IPE.6 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:V.50, B:L.85, B:A.92 Hydrogen bonds: B:G.27, B:N.28, B:N.28, B:G.29, B:R.30, B:H.43, B:R.77, B:R.77 Water bridges: B:R.30, B:R.30, B:R.30, B:R.39, B:R.39 Salt bridges: B:R.30 FPS.5: 8 residues within 4Å: Chain B: A.47, V.50, R.51, A.92, L.93, E.96, I.141 Ligands: FPS.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.50, B:R.51, B:R.51, B:E.96, B:I.141

2 x IPE: 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)

IPE.3: 8 residues within 4Å: Chain A: I.24, M.25, Y.68, A.69, F.70, S.71, N.74 Ligands: FPS.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.24, A:Y.68, A:Y.68 IPE.6: 8 residues within 4Å: Chain B: I.24, M.25, Y.68, A.69, F.70, S.71, N.74 Ligands: FPS.4 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:I.24, B:Y.68, B:Y.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, R.T. et al., Crystal structures of undecaprenyl pyrophosphate synthase in complex with magnesium, isopentenyl pyrophosphate, and farnesyl thiopyrophosphate: roles of the metal ion and conserved residues in catalysis. J.Biol.Chem. (2005)

Release Date

2005-03-22

Peptides

Undecaprenyl pyrophosphate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Undecaprenyl pyrophosphate synthetase

Related Entries With Identical Sequence