SMTL ID : 1x0r.6 (5 other biounits)

Thioredoxin Peroxidase from Aeropyrum pernix K1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

28 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.231, E.234 Chain B: N.176, E.178 Ligand excluded by PLIP EDO.2: 4 residues within 4Å: Chain A: H.20, H.28, Y.29, P.99 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: T.46, P.47, V.48, C.49, R.125, M.144 Ligand excluded by PLIP EDO.4: 5 residues within 4Å: Chain A: W.35, D.131, A.132, R.133, D.164 Ligand excluded by PLIP EDO.5: 4 residues within 4Å: Chain A: R.227, R.230, R.231, E.234 Ligand excluded by PLIP EDO.6: 2 residues within 4Å: Chain A: I.82, E.86 Ligand excluded by PLIP EDO.7: 6 residues within 4Å: Chain A: I.180, G.181, E.182, T.215 Chain B: K.235, L.239 Ligand excluded by PLIP EDO.8: 4 residues within 4Å: Chain A: D.208 Chain B: W.87, H.91 Ligands: EDO.28 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: E.182, T.215, P.216, A.217, V.222 Ligand excluded by PLIP EDO.10: 7 residues within 4Å: Chain A: R.198, M.199, G.202, Q.203, Y.204, S.206, C.212 Ligand excluded by PLIP EDO.11: 4 residues within 4Å: Chain A: R.58, K.238, L.240, E.243 Ligand excluded by PLIP EDO.12: 3 residues within 4Å: Chain A: V.30, A.132, R.133 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: V.16, T.17, I.101, A.102, D.103, V.108 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain A: L.166, R.168, P.216 Ligand excluded by PLIP EDO.15: 5 residues within 4Å: Chain A: E.178 Chain B: R.231, E.234, P.236 Ligands: EDO.20 Ligand excluded by PLIP EDO.16: 1 residues within 4Å: Chain B: T.190 Ligand excluded by PLIP EDO.17: 4 residues within 4Å: Chain B: E.192, A.195, R.196, W.209 Ligand excluded by PLIP EDO.18: 5 residues within 4Å: Chain B: L.162, P.216, A.217, S.218, D.221 Ligand excluded by PLIP EDO.19: 2 residues within 4Å: Chain B: Q.194, R.198 Ligand excluded by PLIP EDO.20: 4 residues within 4Å: Chain B: P.236, A.237, K.238 Ligands: EDO.15 Ligand excluded by PLIP EDO.21: 6 residues within 4Å: Chain B: V.16, T.17, I.101, A.102, D.103, V.108 Ligand excluded by PLIP EDO.22: 6 residues within 4Å: Chain B: W.35, D.131, A.132, R.133, R.137, D.164 Ligand excluded by PLIP EDO.23: 5 residues within 4Å: Chain B: D.62, E.224, R.227, Y.228, R.231 Ligand excluded by PLIP EDO.24: 7 residues within 4Å: Chain A: P.188 Chain B: T.46, P.47, V.48, C.49, R.125, M.144 Ligand excluded by PLIP EDO.25: 8 residues within 4Å: Chain B: R.198, M.199, S.201, G.202, Q.203, Y.204, S.206, C.212 Ligand excluded by PLIP EDO.26: 2 residues within 4Å: Chain B: I.82, E.86 Ligand excluded by PLIP EDO.27: 3 residues within 4Å: Chain B: G.202, Q.203, Y.204 Ligand excluded by PLIP EDO.28: 5 residues within 4Å: Chain B: E.86, W.87, R.90, H.91 Ligands: EDO.8 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nakamura, T. et al., Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1. Proteins (2006)

Release Date

2005-12-20

Peptides

Probable peroxiredoxin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Probable peroxiredoxin

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