SMTL ID : 1x0v.1 (1 other biounit)

Crystal Structure of Homo Sapien Glycerol-3-Phosphate Dehydrogenase 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.25, H.72, K.73 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.73 Water bridges: A:K.25, A:E.164 Salt bridges: A:K.25, A:H.72 SO4.2: 0 residues within 4Å: (No contacts) 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.165, A:K.165, A:K.165 SO4.3: 5 residues within 4Å: Chain A: G.17, N.18, W.19, P.99, R.274 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.18, A:W.19 Water bridges: A:G.17, A:G.20, A:V.97, A:R.274, A:R.274 Salt bridges: A:R.274 SO4.4: 2 residues within 4Å: Chain A: G.272, R.276 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.272 Water bridges: A:R.276, A:R.276, A:R.276 Salt bridges: A:R.276, A:K.277 SO4.5: 3 residues within 4Å: Chain B: G.17, N.18, W.19 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.18, B:W.19 Water bridges: B:N.18, B:N.18, B:N.18, B:G.20, B:R.274, B:R.274 Salt bridges: B:R.274 SO4.6: 6 residues within 4Å: Chain B: K.209, N.210, T.269, G.273, R.274, N.275 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:R.274, B:N.275 Water bridges: B:K.209, B:K.209, B:K.209, B:K.209, B:R.274 Salt bridges: B:K.209, B:R.274 SO4.7: 3 residues within 4Å: Chain A: K.183, Q.187, R.192 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.187 Water bridges: A:Q.180, A:Q.180, A:K.183, A:R.192, A:R.192 Salt bridges: A:K.183, A:R.192 SO4.8: 3 residues within 4Å: Chain B: P.351, E.352, H.353 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.352, B:E.352, B:H.353 SO4.9: 7 residues within 4Å: Chain A: K.209, N.210, T.269, G.273, R.274, N.275, Q.303 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.210, A:R.274, A:N.275 Water bridges: A:K.209, A:K.209, A:N.210 Salt bridges: A:K.209, A:R.274 SO4.10: 5 residues within 4Å: Chain B: K.25, G.71, H.72, K.73, A.162 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.73 Water bridges: B:G.71 Salt bridges: B:K.25, B:H.72 SO4.11: 4 residues within 4Å: Chain B: K.245, V.252, S.253, S.254 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.252, B:S.254 Water bridges: B:A.255 Salt bridges: B:K.245 SO4.12: 3 residues within 4Å: Chain A: K.245, S.253, S.254 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.254, A:S.254 Water bridges: A:A.255 Salt bridges: A:K.245 SO4.13: 3 residues within 4Å: Chain A: P.351, E.352, H.353 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.352, A:H.353 Water bridges: A:H.353 SO4.14: 3 residues within 4Å: Chain B: K.183, Q.187, R.192 8 PLIP interactions: 1 interactions with chain A, 7 interactions with chain B Water bridges: A:E.352, B:Q.180, B:K.183, B:K.183, B:K.183 Hydrogen bonds: B:Q.187, B:R.192 Salt bridges: B:K.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ou, X. et al., Crystal Structures of Human Glycerol 3-phosphate Dehydrogenase 1 (GPD1). J.Mol.Biol. (2006)

Release Date

2006-04-11

Peptides

Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic

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