SMTL ID : 1x1j.1

Crystal Structure of Xanthan Lyase (N194A) with a Substrate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 46D: (4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID)(Non-covalent)

46D.1: 12 residues within 4Å: Chain A: N.121, W.122, W.123, H.124, W.172, H.221, Y.230, R.284, R.288, Y.290, N.399, R.587 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:W.123 Hydrogen bonds: A:N.121, A:N.121, A:W.122, A:W.123, A:Y.230, A:Y.230, A:R.284, A:R.284, A:R.288, A:R.288, A:Y.290, A:N.399 Water bridges: A:S.233, A:R.587, A:R.587 Salt bridges: A:H.221, A:R.284, A:R.288, A:R.587

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.490, D.491, E.492, A.636, E.651 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.490, A:D.491, A:E.492, A:E.651, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maruyama, Y. et al., Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism. J.Mol.Biol. (2005)

Release Date

2005-07-19

Peptides

xanthan lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

xanthan lyase

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