SMTL ID : 1x1n.1 (1 other biounit)

Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: N.180 No protein-ligand interaction detected (PLIP)

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Y.84, H.420, D.421, N.485, W.494 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.421, A:N.485 Water bridges: A:D.321 GOL.3: 6 residues within 4Å: Chain A: P.243, I.244, Y.245, W.286, D.321, H.322 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.244, A:Y.245, A:Y.245, A:D.321 Water bridges: A:S.288, A:S.288 GOL.4: 4 residues within 4Å: Chain A: L.370, G.371, F.394, H.404 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.371 Water bridges: A:L.370, A:G.371 GOL.5: 3 residues within 4Å: Chain A: R.76, G.77, D.80 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.76 Water bridges: A:G.77, A:D.80 GOL.6: 4 residues within 4Å: Chain A: T.181, I.182, S.183, D.186 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.182, A:S.183, A:D.186 Water bridges: A:D.186, A:D.186 GOL.7: 6 residues within 4Å: Chain A: D.168, Y.171, R.194, L.199, W.254 Ligands: GOL.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.194 Water bridges: A:Y.171, A:L.199 GOL.8: 7 residues within 4Å: Chain A: R.426, S.453, R.454, I.457, D.474, G.477, K.513 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.426, A:R.426, A:K.513, A:K.513 Water bridges: A:R.454, A:R.454, A:G.477 GOL.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.10: 5 residues within 4Å: Chain A: S.163, S.164, E.167, D.168 Ligands: GOL.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.163, A:D.168 Water bridges: A:D.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imamura, K. et al., Structure determination and refinement at 1.8 A resolution of Disproportionating Enzyme from Potato. to be published

Release Date

2006-04-18

Peptides

4-alpha-glucanotransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

4-alpha-glucanotransferase

Related Entries With Identical Sequence