SMTL ID : 1x3s.1

Crystal structure of human Rab18 in complex with Gppnhp

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: S.29, T.47 Ligands: GNP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.29, A:T.47, H2O.1, H2O.3

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.2: 24 residues within 4Å: Chain A: E.23, S.24, G.25, V.26, G.27, K.28, S.29, S.30, F.40, D.41, P.42, L.44, A.46, T.47, A.72, G.73, N.129, K.130, D.132, K.133, S.158, A.159, K.160 Ligands: MG.1 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:S.24, A:G.25, A:V.26, A:G.27, A:K.28, A:K.28, A:S.29, A:S.30, A:S.30, A:D.41, A:T.47, A:T.47, A:G.73, A:N.129, A:K.130, A:K.130, A:A.159, A:K.160 Water bridges: A:S.29, A:S.29, A:P.42, A:Q.74, A:Q.74, A:K.133, A:K.160 Salt bridges: A:D.132 pi-Stacking: A:F.40, A:F.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kukimoto-Niino, M. et al., Crystal structure of human Rab18 in complex with Gppnhp. To be Published

Release Date

2005-11-10

Peptides

Ras-related protein Rab-18: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ras-related protein Rab-18