SMTL ID : 1x9n.1

Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 13 residues within 4Å: Chain B: G.1 Chain D: E.335, Y.336, K.337, Y.338, R.342, R.358, E.390, F.429, M.492, K.494, W.511, K.513 11 PLIP interactions: 11 interactions with chain D Hydrogen bonds: D:E.335, D:E.335, D:K.337, D:Y.338, D:R.342, D:R.358, D:K.494 Salt bridges: D:K.337, D:K.513 pi-Stacking: D:F.429, D:F.429

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pascal, J.M. et al., Human DNA ligase I completely encircles and partially unwinds nicked DNA. Nature (2004)

Release Date

2004-11-30

Peptides

DNA ligase I: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

D
A

DNA ligase I