SMTL ID : 1xcd.1

Dimeric bovine tissue-extracted decorin, crystal form 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.155, P.156, N.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.182 Water bridges: A:K.158 NAG.2: 1 residues within 4Å: Chain A: N.233 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.233, A:N.233 NAG.3: 1 residues within 4Å: Chain A: N.274 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.274 Hydrogen bonds: A:N.274 NAG.6: 3 residues within 4Å: Chain B: N.155, P.156, N.182 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.182 Water bridges: B:K.158 NAG.7: 1 residues within 4Å: Chain B: N.233 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.233, B:N.233 NAG.8: 1 residues within 4Å: Chain B: N.274 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.274 Hydrogen bonds: B:N.274

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 2 residues within 4Å: Chain A: F.301, Q.325 No protein-ligand interaction detected (PLIP) TRS.5: 5 residues within 4Å: Chain A: L.33, R.34, V.35, A.55, H.79 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.33 TRS.9: 2 residues within 4Å: Chain B: F.301, Q.325 No protein-ligand interaction detected (PLIP) TRS.10: 5 residues within 4Å: Chain B: L.33, R.34, V.35, A.55, H.79 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, P.G. et al., Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan. Proc.Natl.Acad.Sci.Usa (2004)

Release Date

2004-11-02

Peptides

Decorin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Decorin

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