SMTL ID : 1xdi.1 (1 other biounit)

Crystal structure of LpdA (Rv3303c) from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 36 residues within 4Å: Chain A: G.9, G.10, G.11, P.12, A.13, I.34, D.35, C.36, D.37, G.41, A.42, A.43, D.47, C.48, S.51, K.52, G.115, R.116, G.117, A.151, T.152, G.153, A.154, W.172, T.193, L.284, G.316, D.317, P.323, L.324, A.325, S.326, A.328, F.357 Chain B: Y.450, P.451 26 PLIP interactions: 23 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:D.47, A:W.172, A:W.172 Hydrogen bonds: A:G.10, A:G.11, A:A.13, A:D.35, A:C.36, A:D.37, A:D.37, A:A.42, A:A.43, A:K.52, A:G.117, A:G.117, A:A.154, A:D.317, A:P.323, A:A.325, A:S.326, B:Y.450 Water bridges: A:G.14, A:G.153, A:L.324, B:Y.450, B:Y.450 FAD.2: 37 residues within 4Å: Chain A: Y.450, P.451 Chain B: G.9, G.11, P.12, A.13, I.34, D.35, C.36, D.37, G.38, G.41, A.42, A.43, D.47, C.48, S.51, K.52, G.115, R.116, G.117, A.151, T.152, G.153, A.154, W.172, T.193, L.284, A.315, G.316, D.317, P.323, L.324, A.325, S.326, A.328, F.357 25 PLIP interactions: 24 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:D.47, B:W.172, B:W.172, B:T.193 Hydrogen bonds: B:G.10, B:A.13, B:D.35, B:C.36, B:D.37, B:D.37, B:D.37, B:G.38, B:A.42, B:A.43, B:K.52, B:G.117, B:G.117, B:A.154, B:D.317, B:P.323, B:A.325, B:S.326, A:Y.450 Water bridges: B:G.14, B:N.280 FAD.3: 36 residues within 4Å: Chain C: G.9, G.10, G.11, P.12, A.13, I.34, D.35, C.36, D.37, G.41, A.42, A.43, D.47, C.48, S.51, K.52, G.115, R.116, G.117, A.151, T.152, G.153, A.154, W.172, T.193, L.284, G.316, D.317, P.323, L.324, A.325, S.326, A.328, F.357 Chain D: Y.450, P.451 25 PLIP interactions: 22 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:D.47, C:W.172, C:W.172 Hydrogen bonds: C:G.10, C:G.11, C:A.13, C:C.36, C:D.37, C:D.37, C:A.42, C:A.43, C:K.52, C:G.117, C:G.117, C:A.154, C:D.317, C:P.323, C:A.325, C:S.326, D:Y.450 Water bridges: C:G.14, C:G.153, C:L.324, D:Y.450, D:Y.450 FAD.4: 37 residues within 4Å: Chain C: Y.450, P.451 Chain D: G.9, G.11, P.12, A.13, I.34, D.35, C.36, D.37, G.38, G.41, A.42, A.43, D.47, C.48, S.51, K.52, G.115, R.116, G.117, A.151, T.152, G.153, A.154, W.172, T.193, L.284, A.315, G.316, D.317, P.323, L.324, A.325, S.326, A.328, F.357 23 PLIP interactions: 22 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:D.47, D:W.172, D:W.172, D:T.193 Hydrogen bonds: D:G.10, D:A.13, D:C.36, D:D.37, D:D.37, D:G.38, D:A.42, D:A.43, D:K.52, D:G.117, D:G.117, D:A.154, D:D.317, D:P.323, D:A.325, D:S.326, C:Y.450 Water bridges: D:G.14, D:N.280

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Argyrou, A. et al., Characterization of a New Member of the Flavoprotein Disulfide Reductase Family of Enzymes from Mycobacterium tuberculosis. J.Biol.Chem. (2004)

Release Date

2004-10-19

Peptides

Rv3303c-lpdA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Rv3303c-lpdA

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