SMTL ID : 1xe7.2 (1 other biounit)

Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly roll fold

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x GUN: GUANINE(Non-covalent)

GUN.1: 5 residues within 4Å: Chain A: H.42, F.48, E.50, I.82, F.171 7 PLIP interactions: 7 interactions with chain A Water bridges: A:T.80, A:E.165, A:E.165 Salt bridges: A:E.50 pi-Stacking: A:F.171, A:F.171 pi-Cation interactions: A:F.171 GUN.3: 5 residues within 4Å: Chain B: H.42, F.48, E.50, I.82, F.171 8 PLIP interactions: 8 interactions with chain B Water bridges: B:T.80, B:E.165, B:E.165, B:H.176 Salt bridges: B:E.50 pi-Stacking: B:F.171, B:F.171 pi-Cation interactions: B:F.171

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: I.99, N.100, R.101, V.168, P.169 Chain B: Y.56, Q.78 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.101, A:R.101 Water bridges: A:N.100, A:N.100, B:Q.78, B:Q.78 EDO.4: 7 residues within 4Å: Chain A: Y.56, Q.78 Chain B: I.99, N.100, R.101, V.168, P.169 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.101, B:R.101 Water bridges: B:N.100, B:N.100, A:Q.78, A:Q.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, C.-Z. et al., Crystal structure of the YML079w protein from Saccharomyces cerevisiae reveals a new sequence family of the jelly-roll fold. Protein Sci. (2005)

Release Date

2005-01-11

Peptides

Hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
C

Hypothetical 22.5 kDa protein in TUB1-CPR3 intergenic region

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