SMTL ID : 1xeq.2 (1 other biounit)

Crystal tructure of RNA binding domain of influenza B virus non-structural protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

38 x BR: BROMIDE ION(Non-covalent)

BR.1: 3 residues within 4Å: Chain A: M.91, D.92, F.100 Ligand excluded by PLIP BR.2: 3 residues within 4Å: Chain A: E.29, R.33, A.79 Ligand excluded by PLIP BR.3: 3 residues within 4Å: Chain A: K.83, S.94, A.95 Ligand excluded by PLIP BR.4: 2 residues within 4Å: Chain A: R.38 Chain B: E.11 Ligand excluded by PLIP BR.5: 5 residues within 4Å: Chain A: G.96, I.97 Chain B: F.90, D.92 Chain C: Q.37 Ligand excluded by PLIP BR.6: 7 residues within 4Å: Chain A: R.33, V.82, K.86, A.95, G.96 Chain B: L.89, D.92 Ligand excluded by PLIP BR.7: 2 residues within 4Å: Chain A: K.83, S.94 Ligand excluded by PLIP BR.8: 1 residues within 4Å: Chain A: E.101 Ligand excluded by PLIP BR.9: 5 residues within 4Å: Chain A: Y.31, R.47 Chain B: I.27, Y.31, R.47 Ligand excluded by PLIP BR.10: 2 residues within 4Å: Chain A: R.47, R.50 Ligand excluded by PLIP BR.11: 3 residues within 4Å: Chain A: A.19, N.22, M.84 Ligand excluded by PLIP BR.12: 2 residues within 4Å: Chain A: Y.42, P.43 Ligand excluded by PLIP BR.13: 4 residues within 4Å: Chain B: E.32, K.52, L.74, K.78 Ligand excluded by PLIP BR.14: 3 residues within 4Å: Chain B: G.13, P.14, G.15 Ligand excluded by PLIP BR.15: 1 residues within 4Å: Chain B: R.33 Ligand excluded by PLIP BR.16: 4 residues within 4Å: Chain B: A.19, N.22 Chain C: E.98, G.99 Ligand excluded by PLIP BR.17: 3 residues within 4Å: Chain B: S.35, Q.45, H.49 Ligand excluded by PLIP BR.18: 4 residues within 4Å: Chain B: N.63, R.71, M.72, S.73 Ligand excluded by PLIP BR.19: 3 residues within 4Å: Chain B: S.73, L.74, E.75 Ligand excluded by PLIP BR.20: 3 residues within 4Å: Chain C: M.91, D.92, F.100 Ligand excluded by PLIP BR.21: 3 residues within 4Å: Chain C: E.29, R.33, A.79 Ligand excluded by PLIP BR.22: 3 residues within 4Å: Chain C: K.83, S.94, A.95 Ligand excluded by PLIP BR.23: 2 residues within 4Å: Chain C: R.38 Chain D: E.11 Ligand excluded by PLIP BR.24: 5 residues within 4Å: Chain A: Q.37 Chain C: G.96, I.97 Chain D: F.90, D.92 Ligand excluded by PLIP BR.25: 7 residues within 4Å: Chain C: R.33, V.82, K.86, A.95, G.96 Chain D: L.89, D.92 Ligand excluded by PLIP BR.26: 2 residues within 4Å: Chain C: K.83, S.94 Ligand excluded by PLIP BR.27: 1 residues within 4Å: Chain C: E.101 Ligand excluded by PLIP BR.28: 5 residues within 4Å: Chain C: Y.31, R.47 Chain D: I.27, Y.31, R.47 Ligand excluded by PLIP BR.29: 2 residues within 4Å: Chain C: R.47, R.50 Ligand excluded by PLIP BR.30: 3 residues within 4Å: Chain C: A.19, N.22, M.84 Ligand excluded by PLIP BR.31: 2 residues within 4Å: Chain C: Y.42, P.43 Ligand excluded by PLIP BR.32: 4 residues within 4Å: Chain D: E.32, K.52, L.74, K.78 Ligand excluded by PLIP BR.33: 3 residues within 4Å: Chain D: G.13, P.14, G.15 Ligand excluded by PLIP BR.34: 1 residues within 4Å: Chain D: R.33 Ligand excluded by PLIP BR.35: 4 residues within 4Å: Chain A: E.98, G.99 Chain D: A.19, N.22 Ligand excluded by PLIP BR.36: 3 residues within 4Å: Chain D: S.35, Q.45, H.49 Ligand excluded by PLIP BR.37: 4 residues within 4Å: Chain D: N.63, R.71, M.72, S.73 Ligand excluded by PLIP BR.38: 3 residues within 4Å: Chain D: S.73, L.74, E.75 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, C. et al., Conserved surface features form the double-stranded RNA binding site of non-structural protein 1 (NS1) from influenza A and B viruses. J.Biol.Chem. (2007)

Release Date

2005-09-20

Peptides

Nonstructural protein NS1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Nonstructural protein NS1

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