SMTL ID : 1xg5.2 (1 other biounit)

Structure of human putative dehydrogenase MGC4172 in complex with NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 30 residues within 4Å: Chain A: G.39, S.41, G.42, G.43, I.44, A.63, R.64, T.65, C.90, D.91, L.92, S.93, N.118, A.119, G.120, V.141, I.170, N.171, S.172, Y.187, K.191, P.219, G.220, V.221, V.222, T.224, Q.225, F.226, K.229 Ligands: ACY.2 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:P.219 Hydrogen bonds: A:S.41, A:S.41, A:S.41, A:G.42, A:I.44, A:R.64, A:T.65, A:T.65, A:D.91, A:L.92, A:S.93, A:N.118, A:G.120, A:K.191, A:V.222, A:V.222, A:T.224, A:Q.225, A:F.226 Water bridges: A:G.45, A:R.64, A:R.64, A:N.118, A:A.227, A:K.229 Salt bridges: A:R.64, A:K.229, A:K.229 NAP.3: 30 residues within 4Å: Chain B: G.39, S.41, G.42, G.43, I.44, A.63, R.64, T.65, C.90, D.91, L.92, S.93, N.118, A.119, G.120, V.141, I.170, N.171, S.172, Y.187, K.191, P.219, G.220, V.221, V.222, T.224, Q.225, F.226, K.229 Ligands: ACY.4 30 PLIP interactions: 30 interactions with chain B Hydrogen bonds: B:G.39, B:S.41, B:S.41, B:S.41, B:G.42, B:I.44, B:R.64, B:T.65, B:D.91, B:L.92, B:S.93, B:N.118, B:G.120, B:Y.187, B:K.191, B:V.222, B:V.222, B:T.224, B:T.224, B:Q.225 Water bridges: B:G.45, B:R.64, B:R.64, B:S.93, B:N.118, B:A.227, B:K.229 Salt bridges: B:R.64, B:K.229, B:K.229 NAP.5: 26 residues within 4Å: Chain B: E.70 Chain C: G.39, A.40, S.41, G.42, G.43, I.44, A.63, R.64, C.90, D.91, L.92, S.93, N.118, A.119, G.120, V.141, I.170, N.171, S.172, Y.187, K.191, P.219, G.220, V.222, Q.225 29 PLIP interactions: 29 interactions with chain C Hydrophobic interactions: C:P.219, C:V.222 Hydrogen bonds: C:G.39, C:S.41, C:S.41, C:S.41, C:G.42, C:I.44, C:R.64, C:T.65, C:D.91, C:D.91, C:L.92, C:S.93, C:N.118, C:G.120, C:K.191, C:V.222, C:V.222, C:Q.225 Water bridges: C:G.45, C:R.64, C:R.64, C:S.93, C:N.118, C:Q.225, C:Q.225 Salt bridges: C:R.64 pi-Cation interactions: C:R.64 NAP.6: 30 residues within 4Å: Chain D: G.39, S.41, G.42, G.43, I.44, A.63, R.64, T.65, C.90, D.91, L.92, S.93, N.118, A.119, G.120, V.141, I.170, N.171, S.172, Y.187, K.191, P.219, G.220, V.221, V.222, T.224, Q.225, F.226, K.229 Ligands: ACY.7 30 PLIP interactions: 30 interactions with chain D Hydrogen bonds: D:G.39, D:S.41, D:S.41, D:S.41, D:G.42, D:I.44, D:R.64, D:T.65, D:T.65, D:D.91, D:L.92, D:S.93, D:N.118, D:G.120, D:K.191, D:V.222, D:V.222, D:T.224, D:T.224, D:Q.225, D:F.226 Water bridges: D:G.45, D:S.93, D:S.93, D:N.118, D:A.227, D:K.229 Salt bridges: D:R.64, D:K.229, D:K.229

3 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 4 residues within 4Å: Chain A: S.172, Y.187, F.226 Ligands: NAP.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.187, A:F.226 Hydrogen bonds: A:S.172, A:Y.187, A:Y.187 Water bridges: A:M.173, A:S.174 ACY.4: 4 residues within 4Å: Chain B: S.172, Y.187, F.226 Ligands: NAP.3 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.187, B:F.226 Hydrogen bonds: B:S.172 Water bridges: B:M.173, B:S.174, B:S.174, B:S.174 ACY.7: 4 residues within 4Å: Chain D: S.172, Y.187, F.226 Ligands: NAP.6 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:Y.187, D:F.226 Hydrogen bonds: D:S.172, D:S.174, D:Y.187 Water bridges: D:M.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kavanagh, K. et al., Structural Genomics Consortium: Structure of the putative human dehydrogenase MGC4172. To be Published

Release Date

2004-10-05

Peptides

ARPG836: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
B

D
C

ARPG836

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