SMTL ID : 1xgy.1 (1 other biounit)

Crystal Structure of Anti-Meta I Rhodopsin Fab Fragment K42-41L

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

hetero-1-1-mer

Ligands

1 x THR- GLY- ALA- LEU- GLN- GLU: Rhodopsin Epitope Mimetic Peptide(Non-covalent)

THR-GLY-ALA-LEU-GLN-GLU.1: 15 residues within 4Å: Chain A: Y.37, Y.39, R.55, M.96, L.97, E.98, H.99, L.101 Chain B: Y.33, N.35, W.50, T.99, S.101, Y.102, V.103 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.33, B:Y.33, B:Y.33, B:W.50, B:T.99 Hydrogen bonds: B:Y.33, B:N.35, B:N.35, B:V.103, A:Y.39, A:M.96, A:H.99 Salt bridges: A:R.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Piscitelli, C.L. et al., Equilibrium between metarhodopsin-I and metarhodopsin-II is dependent on the conformation of the third cytoplasmic loop. J.Biol.Chem. (2006)

Release Date

2005-09-27

Peptides

K42-41L Fab Light Chain: A
K42-41L Fab Heavy Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

K42-41L Fab Light Chain

K42-41L Fab Heavy Chain

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