SMTL ID : 1xhb.1

The Crystal Structure of UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase-T1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: R.339, H.340, Y.341, F.342, N.465 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.341 Hydrogen bonds: A:H.340, A:Y.341

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 3 residues within 4Å: Chain A: D.122, H.124, H.257 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.122, A:H.124, A:H.257

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: K.387, E.420, Y.421 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.420, A:Y.421 CA.4: 2 residues within 4Å: Chain A: S.311, R.312 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fritz, T.A. et al., The beginnings of mucin biosynthesis: The crystal structure of UDP-GalNAc:polypeptide {alpha}-N-acetylgalactosaminyltransferase-T1. Proc.Natl.Acad.Sci.USA (2004)

Release Date

2004-10-26

Peptides

Polypeptide N-acetylgalactosaminyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polypeptide N-acetylgalactosaminyltransferase 1