SMTL ID : 1xkg.1

Crystal structure of the major house dust mite allergen Der p 1 in its pro form at 1.61 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.61 Å

Oligo State

monomer

Ligands

1 x YT3: YTTRIUM (III) ION(Non-covalent)

YT3.1: 4 residues within 4Å: Chain A: D.136, L.137, E.139, E.171 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: R.106, M.107, F.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.107 Water bridges: A:I.105, A:R.106, A:E.171 SO4.3: 3 residues within 4Å: Chain A: Q.181, S.182, R.184 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.182 Salt bridges: A:R.184

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: Q.240, V.263, D.264, A.285, A.286, N.287 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.264, A:A.286, A:N.287 Water bridges: A:Q.240, A:A.286 GOL.5: 13 residues within 4Å: Chain A: M.63, F.75, G.112, A.114, W.115, G.153, D.154, T.155, I.156, I.221, Y.249, H.250, A.251 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.112, A:A.114, A:W.115, A:I.156, A:Y.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Meno, K. et al., The crystal structure of recombinant proDer p 1, a major house dust mite proteolytic allergen. J.Immunol. (2005)

Release Date

2005-06-28

Peptides

Major mite fecal allergen Der p 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Major mite fecal allergen Der p 1