SMTL ID : 1xoi.1

Human Liver Glycogen Phosphorylase A complexed with Chloroindoloyl glycine amide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x NBG: N-acetyl-beta-D-glucopyranosylamine(Non-covalent)

NBG.1: 14 residues within 4Å: Chain A: G.135, L.136, L.139, D.283, N.284, D.339, H.377, V.455, N.484, Y.573, E.672, A.673, S.674, G.675 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.284, A:N.284, A:N.284, A:H.377, A:N.484, A:N.484, A:E.672, A:E.672, A:S.674, A:S.674, A:G.675 Water bridges: A:L.136, A:T.378, A:Y.573, A:A.673 NBG.4: 15 residues within 4Å: Chain B: G.135, L.136, L.139, N.284, D.339, H.377, T.378, V.455, N.484, Y.573, E.672, A.673, S.674, G.675, T.676 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:T.378 Hydrogen bonds: B:N.284, B:N.284, B:H.377, B:N.484, B:N.484, B:E.672, B:S.674, B:G.675, B:G.675 Water bridges: B:L.136, B:A.673, B:A.673

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Non-covalent)

PLP.2: 15 residues within 4Å: Chain A: Y.90, G.134, G.135, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.90, A:Y.648 Hydrogen bonds: A:V.567, A:T.676, A:T.676, A:G.677 Water bridges: A:K.568, A:K.574, A:K.574, A:K.574, A:G.675, A:N.678, A:N.678 Salt bridges: A:K.568, A:K.574 PLP.5: 15 residues within 4Å: Chain B: Y.90, G.134, G.135, W.491, V.567, K.568, K.574, Y.648, R.649, V.650, A.653, G.675, T.676, G.677, K.680 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Y.90, B:Y.648 Hydrogen bonds: B:V.567, B:Y.648, B:T.676, B:T.676, B:G.677 Water bridges: B:G.135, B:K.568, B:K.568, B:K.574, B:K.574, B:K.574, B:N.678 Salt bridges: B:K.568, B:K.574

2 x 288: 5-CHLORO-1H-INDOLE-2-CARBOXYLIC ACID{[CYCLOPENTYL-(2-HYDROXY-ETHYL)-CARBAMOYL]-METHYL}-AMIDE(Non-covalent)

288.3: 19 residues within 4Å: Chain A: R.60, L.63, V.64, W.67, P.188, W.189, E.190, K.191, S.192, P.194, P.229 Chain B: T.38, V.40, F.53, H.57, Y.185, G.186, N.187, P.188 19 PLIP interactions: 4 interactions with chain B, 15 interactions with chain A Hydrophobic interactions: B:V.40, B:F.53, B:P.188, A:W.67, A:K.191, A:K.191, A:P.229 Hydrogen bonds: B:T.38, A:E.190, A:K.191, A:S.192, A:S.192 Water bridges: A:R.60, A:R.60, A:R.60, A:R.60, A:R.60, A:S.192 pi-Cation interactions: A:R.60 288.6: 19 residues within 4Å: Chain A: T.38, V.40, F.53, H.57, Y.185, G.186, N.187, P.188 Chain B: R.60, L.63, V.64, W.67, P.188, W.189, E.190, K.191, S.192, P.194, P.229 18 PLIP interactions: 5 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:V.40, A:F.53, A:F.53, A:P.188, B:W.67, B:K.191, B:P.229 Hydrogen bonds: A:T.38, B:E.190, B:K.191, B:S.192, B:S.192 Water bridges: B:R.60, B:R.60, B:R.60, B:R.60, B:S.192 pi-Cation interactions: B:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, S.W. et al., 5-Chloroindoloyl glycine amide inhibitors of glycogen phosphorylase: synthesis, in vitro, in vivo, and X-ray crystallographic characterization. Bioorg.Med.Chem.Lett. (2005)

Release Date

2005-04-12

Peptides

Glycogen phosphorylase, liver form: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycogen phosphorylase, liver form