SMTL ID : 1xp0.1

Catalytic Domain Of Human Phosphodiesterase 5A In Complex With Vardenafil

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.105, H.141, D.142, D.253 Ligands: MG.2 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.105, A:H.141, A:D.142, A:D.253, H2O.1, H2O.1

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: D.142 Ligands: ZN.1 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.142, H2O.1, H2O.1, H2O.1, H2O.1, H2O.1

1 x VDN: 2-{2-ETHOXY-5-[(4-ETHYLPIPERAZIN-1-YL)SULFONYL]PHENYL}-5-METHYL-7-PROPYLIMIDAZO[5,1-F][1,2,4]TRIAZIN-4(1H)-ONE(Non-covalent)

VDN.3: 12 residues within 4Å: Chain A: Y.100, L.254, A.256, I.257, A.268, V.271, A.272, F.275, L.293, M.305, Q.306, F.309 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.254, A:A.256, A:A.272, A:M.305, A:F.309, A:F.309 Hydrogen bonds: A:Q.306 pi-Stacking: A:F.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Card, G.L. et al., Structural Basis for the Activity of Drugs that Inhibit Phosphodiesterases. STRUCTURE (2004)

Release Date

2004-12-14

Peptides

cGMP-specific 3',5'-cyclic phosphodiesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cGMP-specific 3',5'-cyclic phosphodiesterase

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