SMTL ID : 1xpi.3 (2 other biounits)

Crystal structure of the catalytic domain of E. coli pseudouridine synthase RluC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

10 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 3 residues within 4Å: Chain A: H.26, I.36, R.40 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:H.26, A:I.36 Water bridges: A:R.40, A:R.40 Salt bridges: A:R.40 ACY.2: 5 residues within 4Å: Chain A: R.54, K.109, I.111, R.117, T.153 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.111 Hydrogen bonds: A:T.153, A:T.153 Salt bridges: A:R.54, A:K.109, A:R.117 ACY.3: 5 residues within 4Å: Chain A: D.56, E.116, R.117, H.154, R.172 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.117 Water bridges: A:R.117 Salt bridges: A:R.117, A:H.154, A:R.172 ACY.4: 2 residues within 4Å: Chain B: R.69, R.73 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:R.69 Water bridges: B:R.69, B:S.70 Salt bridges: B:R.73 ACY.5: 5 residues within 4Å: Chain B: L.107, K.109, K.126, R.152, T.153 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.107, B:K.109, B:R.152 Hydrogen bonds: B:T.153 Salt bridges: B:K.109, B:K.126 ACY.6: 3 residues within 4Å: Chain C: H.26, I.36, R.40 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:H.26, C:I.36 Water bridges: C:R.40, C:R.40 Salt bridges: C:R.40 ACY.7: 5 residues within 4Å: Chain C: R.54, K.109, I.111, R.117, T.153 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:I.111 Hydrogen bonds: C:T.153 Salt bridges: C:R.54, C:K.109, C:R.117 ACY.8: 5 residues within 4Å: Chain C: D.56, E.116, R.117, H.154, R.172 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.117 Water bridges: C:R.117 Salt bridges: C:R.117, C:H.154, C:R.172 ACY.9: 2 residues within 4Å: Chain D: R.69, R.73 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:R.69 Water bridges: D:R.69, D:S.70 Salt bridges: D:R.73 ACY.10: 5 residues within 4Å: Chain D: L.107, K.109, K.126, R.152, T.153 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:L.107, D:K.109, D:R.152 Hydrogen bonds: D:T.153, D:T.153 Salt bridges: D:K.109, D:K.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Del Campo, M. et al., Possible RNA binding domains of RluC and RluD. To be Published

Release Date

2005-10-04

Peptides

Ribosomal large subunit pseudouridine synthase C: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Ribosomal large subunit pseudouridine synthase C

Related Entries With Identical Sequence