SMTL ID : 1xpp.1

Crystal Structure of TA1416,DNA-directed RNA polymerase subunit L, from Thermoplasma acidophilum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

3 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.1: 4 residues within 4Å: Chain A: H.57, P.58, V.59, I.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.59, A:I.60 SCN.2: 3 residues within 4Å: Chain B: K.79, R.80, R.83 No protein-ligand interaction detected (PLIP) SCN.4: 5 residues within 4Å: Chain C: L.85, Y.89 Chain D: T.33, L.34, Y.89 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Y.89

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 7 residues within 4Å: Chain A: D.31, T.33, L.34 Chain B: E.40, E.41, K.44, L.85 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:T.33, B:L.85 Hydrogen bonds: A:D.31, B:E.41 Salt bridges: B:K.44

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 3 residues within 4Å: Chain C: I.55, K.56, P.58 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal structure of TA1416, DNA-directed RNA polymerase subunit L, from Thermoplasma acidophilum. To be Published

Release Date

2004-11-23

Peptides

DNA-directed RNA polymerase subunit L: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DNA-directed RNA polymerase subunit L