- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 6 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
PGE.2: 10 residues within 4Å:- Chain A: Y.63, P.64, W.69, H.172, A.173, S.174, D.175, E.179, E.183
- Ligands: TRS.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.132, A:D.175, A:E.183
- Water bridges: A:R.182
PGE.4: 10 residues within 4Å:- Chain B: Y.63, P.64, W.69, H.172, A.173, S.174, D.175, E.179, E.183
- Ligands: TRS.3
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.132, B:D.175
- Water bridges: B:R.182
PGE.6: 10 residues within 4Å:- Chain C: Y.63, P.64, W.69, H.172, A.173, S.174, D.175, E.179, E.183
- Ligands: TRS.5
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:H.172, C:D.175, C:E.179
PGE.8: 10 residues within 4Å:- Chain D: Y.63, P.64, W.69, H.172, A.173, S.174, D.175, E.179, E.183
- Ligands: TRS.7
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:D.175, D:D.175, D:E.179, D:E.183
- Water bridges: D:R.132, D:A.173, D:A.173, D:R.182, D:R.182
PGE.10: 10 residues within 4Å:- Chain E: Y.63, P.64, W.69, H.172, A.173, S.174, D.175, E.179, E.183
- Ligands: TRS.9
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:H.172, E:D.175
- Water bridges: E:E.183
PGE.12: 10 residues within 4Å:- Chain F: Y.63, P.64, W.69, H.172, A.173, S.174, D.175, E.179, E.183
- Ligands: TRS.11
6 PLIP interactions:6 interactions with chain F- Hydrogen bonds: F:D.175
- Water bridges: F:R.132, F:A.173, F:A.173, F:R.182, F:R.182
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pedelacq, J.D. et al., Structural and functional features of an NDP kinase from the hyperthermophile crenarchaeon Pyrobaculum aerophilum. Protein Sci. (2005)
- Release Date
- 2005-09-20
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
AD
CE
AF
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 6 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pedelacq, J.D. et al., Structural and functional features of an NDP kinase from the hyperthermophile crenarchaeon Pyrobaculum aerophilum. Protein Sci. (2005)
- Release Date
- 2005-09-20
- Peptides
- Nucleoside diphosphate kinase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
AD
CE
AF
C