SMTL ID : 1xqp.1

Crystal structure of 8-oxoguanosine complexed Pa-AGOG, 8-oxoguanine DNA glycosylase from Pyrobaculum aerophilum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

2 x 8HG: 2'-DEOXY-8-OXOGUANOSINE(Non-covalent)

8HG.1: 12 residues within 4Å: Chain A: Q.31, S.58, Y.59, G.65, W.69, K.140, F.144, K.147, P.170, D.172, D.218, W.222 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:D.172 Hydrogen bonds: A:Q.31, A:K.140, A:K.147, A:P.170 Salt bridges: A:D.172, A:D.218 pi-Stacking: A:F.144, A:F.144, A:W.222, A:W.222, A:W.222 8HG.2: 6 residues within 4Å: Chain A: D.83, C.85, R.86, L.89, K.106, L.110 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.110 Hydrogen bonds: A:R.86, A:R.86, A:K.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lingaraju, G.M. et al., A DNA glycosylase from Pyrobaculum aerophilum with an 8-oxoguanine binding mode and a noncanonical helix-hairpin-helix structure. Structure (2005)

Release Date

2004-11-16

Peptides

8-oxoguanine DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

8-oxoguanine DNA glycosylase

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