- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x B12: COBALAMIN(Non-covalent)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.2: 12 residues within 4Å:- Chain A: R.184, T.186, G.187, Q.188, S.189, Y.236, S.238, L.258, Y.263, R.268, N.299
- Chain B: K.144
14 PLIP interactions:12 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:Y.236, A:L.258, A:Y.263, B:K.144
- Hydrogen bonds: A:G.187, A:S.189, A:S.189, A:S.189, A:S.238, A:N.299
- Salt bridges: A:R.184, A:R.268, B:K.144
- pi-Stacking: A:Y.263
PLP.5: 12 residues within 4Å:- Chain C: R.184, T.186, G.187, Q.188, S.189, Y.236, S.238, L.258, Y.263, R.268, N.299
- Chain D: K.144
16 PLIP interactions:13 interactions with chain C, 3 interactions with chain D- Hydrophobic interactions: C:Y.236, C:L.258, C:Y.263, D:K.144
- Hydrogen bonds: C:G.187, C:S.189, C:S.189, C:S.189, C:S.238, C:Y.263, C:N.299, D:K.144
- Salt bridges: C:R.184, C:R.268, D:K.144
- pi-Stacking: C:Y.263
- 2 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
5AD.3: 6 residues within 4Å:- Chain A: D.54, E.55, V.56, D.64, Y.193
- Ligands: B12.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.54, A:E.55, A:D.64
5AD.6: 6 residues within 4Å:- Chain C: D.54, E.55, V.56, D.64, Y.193
- Ligands: B12.4
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:D.54, C:E.55, C:D.64
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Berkovitch, F. et al., A locking mechanism preventing radical damage in the absence of substrate, as revealed by the x-ray structure of lysine 5,6-aminomutase. Proc.Natl.Acad.Sci.Usa (2004)
- Release Date
- 2004-11-09
- Peptides
- D-lysine 5,6-aminomutase alpha subunit: AC
D-lysine 5,6-aminomutase beta subunit: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-oligomer
- Ligands
- 2 x B12: COBALAMIN(Non-covalent)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Berkovitch, F. et al., A locking mechanism preventing radical damage in the absence of substrate, as revealed by the x-ray structure of lysine 5,6-aminomutase. Proc.Natl.Acad.Sci.Usa (2004)
- Release Date
- 2004-11-09
- Peptides
- D-lysine 5,6-aminomutase alpha subunit: AC
D-lysine 5,6-aminomutase beta subunit: BD - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AB
BD
B