- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 6 x DUT: DEOXYURIDINE-5'-TRIPHOSPHATE(Non-covalent)
DUT.3: 18 residues within 4Å:- Chain A: L.107, A.124, R.126, D.128, W.131, I.135, V.136, Y.171, R.174, A.177, K.178, Y.179, Q.182
- Chain C: R.110, S.111, S.112, R.115
- Ligands: MG.6
22 PLIP interactions:5 interactions with chain C, 17 interactions with chain A- Hydrogen bonds: C:S.111, C:S.111, C:S.112, A:R.126, A:D.128, A:D.128, A:V.136, A:V.136, A:Y.171, A:K.178, A:Q.182
- Salt bridges: C:R.110, C:R.110, A:R.126, A:R.174
- Hydrophobic interactions: A:W.131
- Water bridges: A:R.126, A:R.126, A:R.126, A:R.126, A:R.126, A:R.126
DUT.5: 19 residues within 4Å:- Chain A: G.109, R.110, S.111, S.112, R.115
- Chain B: A.124, R.126, D.128, W.131, I.135, V.136, Y.171, R.174, D.176, A.177, K.178, Y.179, Q.182
- Ligands: MG.1
28 PLIP interactions:6 interactions with chain A, 22 interactions with chain B- Hydrogen bonds: A:G.109, A:R.110, A:S.111, A:S.111, A:S.112, B:R.126, B:D.128, B:D.128, B:V.136, B:V.136, B:K.178, B:Q.182
- Salt bridges: A:R.110, B:R.126, B:R.174, B:K.178, B:K.178
- Hydrophobic interactions: B:W.131
- Water bridges: B:R.126, B:R.126, B:R.126, B:R.126, B:R.126, B:R.126, B:R.126, B:R.126, B:R.174, B:K.178
DUT.7: 19 residues within 4Å:- Chain B: R.110, S.111, S.112, R.115
- Chain C: L.107, A.124, R.126, I.127, D.128, W.131, I.135, V.136, Y.171, R.174, A.177, K.178, Y.179, Q.182
- Ligands: MG.4
23 PLIP interactions:18 interactions with chain C, 5 interactions with chain B- Hydrophobic interactions: C:I.127, C:W.131
- Hydrogen bonds: C:R.126, C:D.128, C:V.136, C:V.136, C:K.178, C:Q.182, B:R.110, B:S.111, B:S.111, B:S.112
- Water bridges: C:R.126, C:R.126, C:R.126, C:R.174, C:R.174, C:R.174
- Salt bridges: C:R.126, C:R.174, C:K.178, C:K.178, B:R.110
DUT.10: 18 residues within 4Å:- Chain D: L.107, A.124, R.126, D.128, W.131, I.135, V.136, Y.171, R.174, A.177, K.178, Y.179, Q.182
- Chain F: R.110, S.111, S.112, R.115
- Ligands: MG.13
20 PLIP interactions:15 interactions with chain D, 5 interactions with chain F- Hydrophobic interactions: D:W.131
- Hydrogen bonds: D:R.126, D:D.128, D:V.136, D:V.136, D:K.178, D:Q.182, F:S.111, F:S.111, F:S.112
- Water bridges: D:R.126, D:R.126, D:R.126, D:R.126, D:R.126, D:R.126
- Salt bridges: D:R.126, D:R.174, F:R.110, F:R.110
DUT.12: 19 residues within 4Å:- Chain D: G.109, R.110, S.111, S.112, R.115
- Chain E: A.124, R.126, D.128, W.131, I.135, V.136, Y.171, R.174, D.176, A.177, K.178, Y.179, Q.182
- Ligands: MG.8
28 PLIP interactions:22 interactions with chain E, 6 interactions with chain D- Hydrophobic interactions: E:W.131
- Hydrogen bonds: E:R.126, E:D.128, E:V.136, E:V.136, E:Y.171, E:K.178, E:Q.182, D:G.109, D:R.110, D:S.111, D:S.111, D:S.112
- Water bridges: E:R.126, E:R.126, E:R.126, E:R.126, E:R.126, E:R.126, E:R.126, E:R.174, E:R.174, E:K.178
- Salt bridges: E:R.126, E:R.174, E:K.178, E:K.178, D:R.110
DUT.14: 19 residues within 4Å:- Chain E: R.110, S.111, S.112, R.115
- Chain F: L.107, A.124, R.126, I.127, D.128, W.131, I.135, V.136, Y.171, R.174, A.177, K.178, Y.179, Q.182
- Ligands: MG.11
25 PLIP interactions:20 interactions with chain F, 5 interactions with chain E- Hydrophobic interactions: F:I.127, F:W.131
- Hydrogen bonds: F:R.126, F:D.128, F:D.128, F:V.136, F:V.136, F:Y.171, F:K.178, F:Q.182, E:R.110, E:S.111, E:S.111, E:S.112
- Water bridges: F:R.126, F:R.126, F:R.126, F:R.174, F:R.174, F:R.174
- Salt bridges: F:R.126, F:R.174, F:K.178, F:K.178, E:R.110
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johansson, E. et al., Structures of dCTP deaminase from Escherichia coli with bound substrate and product: reaction mechanism and determinants of mono- and bifunctionality for a family of enzymes. J.Biol.Chem. (2005)
- Release Date
- 2004-12-21
- Peptides
- Deoxycytidine triphosphate deaminase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
FD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-hexamer
- Ligands
- 8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 6 x DUT: DEOXYURIDINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Johansson, E. et al., Structures of dCTP deaminase from Escherichia coli with bound substrate and product: reaction mechanism and determinants of mono- and bifunctionality for a family of enzymes. J.Biol.Chem. (2005)
- Release Date
- 2004-12-21
- Peptides
- Deoxycytidine triphosphate deaminase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
FD
DE
EF
F