SMTL ID : 1xtm.1 (2 other biounits)

Crystal structure of the double mutant Y88H-P104H of a SOD-like protein from Bacillus subtilis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.65, H.67, H.83, H.145 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.65, A:H.67, A:H.145, H2O.1 CU.6: 4 residues within 4Å: Chain B: H.65, H.67, H.83, H.145 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.65, B:H.67, B:H.83, B:H.145

5 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.83, H.91, H.100, D.103, P.155 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.83, A:H.91, A:H.100, A:D.103, A:D.103 ZN.3: 4 residues within 4Å: Chain A: H.50, D.116 Chain B: H.50, D.116 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Metal complexes: A:H.50, A:D.116, A:D.116, B:H.50, B:D.116 ZN.4: 2 residues within 4Å: Chain A: H.99, D.123 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.99, A:D.123, H2O.2, H2O.6 ZN.5: 4 residues within 4Å: Chain A: E.68, D.136, D.138, G.139 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.68, A:D.136, A:D.136, A:G.139, H2O.5 ZN.7: 5 residues within 4Å: Chain B: H.83, H.91, H.100, D.103, P.155 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.83, B:H.91, B:H.100, B:D.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Banci, L. et al., From an Inactive Prokaryotic SOD Homologue to an Active Protein through Site-Directed Mutagenesis. J.Am.Chem.Soc. (2005)

Release Date

2005-10-04

Peptides

Hypothetical superoxide dismutase-like protein yojM: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Hypothetical superoxide dismutase-like protein yojM

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