SMTL ID : 1xtt.1

Sulfolobus solfataricus uracil phosphoribosyltransferase in complex with uridine 5'-monophosphate (UMP)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x U5P: URIDINE-5'-MONOPHOSPHATE(Non-covalent)

U5P.1: 16 residues within 4Å: Chain A: A.81, R.105, D.140, M.142, I.143, A.144, T.145, A.146, S.147, T.148, G.201, Y.202, I.203, G.208, D.209, A.210 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:A.144 Hydrogen bonds: A:D.140, A:A.144, A:T.145, A:A.146, A:S.147, A:T.148, A:T.148, A:T.148, A:I.203, A:G.208, A:A.210 Water bridges: A:R.80, A:A.81, A:A.81, A:R.105, A:R.105, A:R.105, A:D.140, A:M.149, A:D.209, A:D.209, A:G.211 Salt bridges: A:R.105 U5P.2: 16 residues within 4Å: Chain B: R.80, R.105, D.140, M.142, I.143, A.144, T.145, A.146, S.147, T.148, G.201, Y.202, I.203, G.208, D.209, A.210 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:A.144, B:I.203 Hydrogen bonds: B:R.80, B:R.80, B:R.105, B:D.140, B:M.142, B:A.144, B:T.145, B:A.146, B:S.147, B:T.148, B:T.148, B:I.203, B:G.208, B:A.210 Water bridges: B:R.105, B:T.145, B:A.146, B:M.149 U5P.4: 16 residues within 4Å: Chain C: A.81, R.105, D.140, M.142, I.143, A.144, T.145, A.146, S.147, T.148, G.201, Y.202, I.203, G.208, D.209, A.210 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:A.144 Hydrogen bonds: C:D.140, C:A.144, C:T.145, C:A.146, C:S.147, C:T.148, C:T.148, C:T.148, C:I.203, C:G.208, C:A.210 Water bridges: C:A.81, C:A.81, C:R.105, C:R.105, C:R.105, C:M.142, C:M.149, C:G.211 Salt bridges: C:R.105 U5P.5: 16 residues within 4Å: Chain D: R.80, R.105, D.140, M.142, I.143, A.144, T.145, A.146, S.147, T.148, G.201, Y.202, I.203, G.208, D.209, A.210 20 PLIP interactions: 20 interactions with chain D Hydrophobic interactions: D:A.144, D:I.203 Hydrogen bonds: D:R.80, D:R.80, D:R.105, D:D.140, D:M.142, D:A.144, D:T.145, D:A.146, D:S.147, D:T.148, D:T.148, D:I.203, D:G.208, D:A.210 Water bridges: D:R.105, D:T.145, D:A.146, D:M.149

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.3: 9 residues within 4Å: Chain B: N.77, I.78, L.79, R.80, A.81, A.82, V.83, F.215 Chain C: Y.123 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:V.83, C:Y.123 Hydrogen bonds: B:N.77, B:R.80, B:A.82, B:V.83 ACY.6: 9 residues within 4Å: Chain A: Y.123 Chain D: N.77, I.78, L.79, R.80, A.81, A.82, V.83, F.215 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain A Hydrophobic interactions: D:V.83, A:Y.123 Hydrogen bonds: D:N.77, D:R.80, D:A.82, D:V.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arent, S. et al., Allosteric Regulation and Communication between Subunits in Uracil Phosphoribosyltransferase from Sulfolobus solfataricus(,). Biochemistry (2005)

Release Date

2005-02-08

Peptides

Probable uracil phosphoribosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Probable uracil phosphoribosyltransferase

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