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SMTL ID : 1xvv.1
Crystal Structure of CaiB mutant D169A in complex with carnitinyl-CoA
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.40 Å
Oligo State
homo-dimer
Ligands
2 x
CCQ
:
L-CARNITINYL-COA INNER SALT
(Non-covalent)
CCQ.1:
31 residues within 4Å:
Chain A:
I.25
,
E.26
,
I.27
,
A.28
,
I.46
,
E.47
,
N.48
,
L.74
,
N.75
,
I.76
,
F.77
,
A.98
,
S.99
,
K.100
,
A.103
,
R.106
,
R.107
,
L.126
,
S.127
,
P.141
,
A.142
,
Y.143
,
N.144
,
Y.169
,
A.172
,
M.203
Chain B:
Y.213
,
D.233
,
E.252
,
V.254
,
N.319
21
PLIP interactions
:
2 interactions with chain B
,
19 interactions with chain A
Hydrogen bonds:
B:N.319
,
A:L.74
,
A:I.76
,
A:A.98
,
A:K.100
,
A:A.142
,
A:A.142
,
A:N.144
Salt bridges:
B:E.252
,
A:E.26
,
A:K.100
,
A:K.100
,
A:R.106
,
A:R.107
Hydrophobic interactions:
A:I.25
,
A:E.26
,
A:I.27
Water bridges:
A:G.29
,
A:N.48
,
A:K.100
,
A:N.144
CCQ.2:
31 residues within 4Å:
Chain A:
Y.213
,
D.233
,
E.252
,
V.254
,
N.319
Chain B:
I.25
,
E.26
,
I.27
,
A.28
,
I.46
,
E.47
,
N.48
,
L.74
,
N.75
,
I.76
,
F.77
,
A.98
,
S.99
,
K.100
,
A.103
,
R.106
,
R.107
,
L.126
,
S.127
,
P.141
,
A.142
,
Y.143
,
N.144
,
Y.169
,
A.172
,
M.203
21
PLIP interactions
:
19 interactions with chain B
,
2 interactions with chain A
Hydrophobic interactions:
B:I.25
,
B:E.26
,
B:I.27
Hydrogen bonds:
B:L.74
,
B:I.76
,
B:A.98
,
B:K.100
,
B:A.142
,
B:A.142
,
B:N.144
,
A:N.319
Water bridges:
B:G.29
,
B:N.48
,
B:K.100
,
B:N.144
Salt bridges:
B:E.26
,
B:K.100
,
B:K.100
,
B:R.106
,
B:R.107
,
A:E.252
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Rangarajan, E.S. et al., Crystal Structure of Escherichia coli Crotonobetainyl-CoA: Carnitine CoA-Transferase (CaiB) and Its Complexes with CoA and Carnitinyl-CoA. Biochemistry (2005)
Release Date
2005-03-15
Peptides
Crotonobetainyl-CoA:carnitine CoA-transferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
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