SMTL ID : 1xx6.1 (1 other biounit)

X-ray structure of Clostridium acetobutylicum thymidine kinase with ADP. Northeast Structural Genomics Target CAR26.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.145, C.148, C.183, C.186 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.145, A:C.148, A:C.183, A:C.186 ZN.3: 4 residues within 4Å: Chain B: C.145, C.148, C.183, C.186 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.145, B:C.148, B:C.183, B:C.186

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 15 residues within 4Å: Chain A: P.16, M.17, Y.18, S.19, G.20, K.21, S.22, E.23, S.57, H.58, M.59, A.143, I.144, V.146, A.181 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:Y.18, A:S.19, A:G.20, A:K.21, A:S.22, A:E.23, A:E.23, A:H.58, A:I.144, A:I.144 Water bridges: A:K.21, A:S.22, A:S.22, A:S.22, A:E.23, A:A.181 Salt bridges: A:K.21, A:H.58 ADP.4: 11 residues within 4Å: Chain B: P.16, M.17, Y.18, S.19, G.20, K.21, S.22, E.23, A.143, I.144, V.146 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:P.16, B:Y.18, B:S.19, B:G.20, B:K.21, B:S.22, B:E.23, B:E.23, B:I.144, B:I.144 Water bridges: B:K.21, B:A.181 Salt bridges: B:K.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuzin, A.P. et al., X-ray structure of Clostridium acetobutylicum thymidine kinase with ADP. Northeast Structural Genomics Target CAR26. To be Published

Release Date

2004-12-21

Peptides

Thymidine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidine kinase

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