SMTL ID : 1y07.3 (2 other biounits)

Crystal structure of the superoxide reductase from Treponema pallidum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-tetramer

Ligands

5 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: H.50, H.70, H.76, C.119, H.122 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.50, A:H.70, A:H.76, A:C.119, A:H.122 FE.3: 4 residues within 4Å: Chain A: V.56, Q.111 Chain C: V.56, Q.111 No protein-ligand interaction detected (PLIP) FE.4: 5 residues within 4Å: Chain B: H.50, H.70, H.76, C.119, H.122 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.50, B:H.70, B:H.76, B:C.119, B:H.122 FE.5: 5 residues within 4Å: Chain C: H.50, H.70, H.76, C.119, H.122 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:H.50, C:H.70, C:H.76, C:C.119, C:H.122 FE.7: 5 residues within 4Å: Chain D: H.50, H.70, H.76, C.119, H.122 6 PLIP interactions: 5 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.50, D:H.70, D:H.76, D:C.119, D:H.122, H2O.14

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: A.108 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:A.108, H2O.1, H2O.2, H2O.2, H2O.8, H2O.8 MG.6: 1 residues within 4Å: Chain C: A.108 6 PLIP interactions: 1 interactions with chain C, 5 Ligand-Water interactions Metal complexes: C:A.108, H2O.2, H2O.8, H2O.8, H2O.8, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santos-Silva, T. et al., The first crystal structure of class III superoxide reductase from Treponema pallidum. J.Biol.Inorg.Chem. (2006)

Release Date

2005-11-22

Peptides

desulfoferrodoxin (rbo): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

desulfoferrodoxin (rbo)

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