SMTL ID : 1y0s.2 (1 other biounit)

Crystal structure of PPAR delta complexed with GW2331

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: N.130 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain A: N.138 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: K.25 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: R.192 Ligand excluded by PLIP

1 x 331: (2S)-2-(4-[2-(3-[2,4-DIFLUOROPHENYL]-1-HEPTYLUREIDO)ETHYL]PHENOXY)-2-METHYLBUTYRIC ACID(Non-covalent)

331.5: 27 residues within 4Å: Chain A: I.44, L.50, W.59, V.76, F.77, R.79, C.80, Q.81, T.83, T.84, T.87, H.118, I.121, F.122, M.124, L.125, I.128, L.134, V.136, V.143, I.158, I.159, H.244, M.248, L.260, L.264, Y.268 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:W.59, A:R.79, A:R.79, A:Q.81, A:T.83, A:I.121, A:F.122, A:F.122, A:I.128, A:V.136, A:V.143, A:I.158, A:L.264 Hydrogen bonds: A:T.84, A:Y.268 Salt bridges: A:H.118, A:H.244

1 x B7G: heptyl beta-D-glucopyranoside(Non-covalent)

B7G.6: 5 residues within 4Å: Chain A: T.92, L.113, K.114, E.266, K.269 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.113 Hydrogen bonds: A:E.266, A:K.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Takada, I. et al., Alteration of a Single Amino Acid in Peroxisome Proliferator-Activated Receptor-alpha (PPARalpha) Generates a PPAR delta Phenotype. MOL.ENDOCRINOL. (2000)

Release Date

2005-03-29

Peptides

Peroxisome proliferator activated receptor delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisome proliferator activated receptor delta

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