SMTL ID : 1y1o.1

X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.41, R.48, H.56, K.57 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.41, A:K.57 Salt bridges: A:R.48, A:H.56 SO4.2: 2 residues within 4Å: Chain A: H.180, S.181 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.180, A:S.181 SO4.4: 4 residues within 4Å: Chain B: N.41, R.48, H.56, K.57 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.57, B:K.57 Salt bridges: B:R.48, B:H.56 SO4.5: 6 residues within 4Å: Chain B: T.106, K.107, N.108, P.113, K.115, N.116 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.106, B:K.107, B:N.108, B:N.116 Salt bridges: B:K.115 SO4.6: 5 residues within 4Å: Chain B: D.151, H.154, H.178, H.180, V.199 3 PLIP interactions: 3 interactions with chain B Water bridges: B:D.151 Salt bridges: B:H.154, B:H.180 SO4.7: 5 residues within 4Å: Chain B: Y.46, R.50, I.52 Chain C: Q.173, R.177 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:Y.46 Salt bridges: B:R.50, C:R.177 SO4.8: 4 residues within 4Å: Chain C: N.41, R.48, H.56, K.57 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.41, C:K.57 Salt bridges: C:R.48, C:H.56 SO4.9: 5 residues within 4Å: Chain C: T.106, K.107, P.113, K.115, N.116 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.107, C:N.116 Water bridges: C:N.108 Salt bridges: C:K.107, C:K.115 SO4.11: 3 residues within 4Å: Chain D: R.48, H.56, K.57 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:K.57 Salt bridges: D:R.48, D:H.56 SO4.12: 5 residues within 4Å: Chain D: T.106, K.107, N.108, P.113, K.115 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.106, D:K.107, D:N.108 Salt bridges: D:K.115 SO4.13: 5 residues within 4Å: Chain A: Q.173, R.177 Chain D: Y.46, R.50, I.52 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:Y.46 Salt bridges: D:R.50, A:R.177

2 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 3 residues within 4Å: Chain A: H.154, E.174, H.178 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.154, A:E.174, A:H.178, H2O.1 NI.10: 3 residues within 4Å: Chain C: H.154, E.174, H.178 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.154, C:E.174, C:E.174, C:H.178, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osipiuk, J. et al., X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus. To be Published

Release Date

2004-12-07

Peptides

Penicillin-binding protein-related factor A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Penicillin-binding protein-related factor A