SMTL ID : 1y3t.1

Crystal structure of YxaG, a dioxygenase from Bacillus subtilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.62, H.64, E.69, H.103 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.62, A:H.64, A:E.69, A:H.103, H2O.3 FE.2: 4 residues within 4Å: Chain A: H.234, H.236, E.241, H.275 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.234, A:H.236, A:E.241, A:H.275, H2O.2 FE.3: 4 residues within 4Å: Chain B: H.62, H.64, E.69, H.103 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.62, B:E.69, B:H.103, H2O.9, H2O.12 FE.4: 4 residues within 4Å: Chain B: H.234, H.236, E.241, H.275 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.234, B:E.241, B:H.275, H2O.8, H2O.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gopal, B. et al., The Crystal Structure of a Quercetin 2,3-Dioxygenase from Bacillus subtilis Suggests Modulation of Enzyme Activity by a Change in the Metal Ion at the Active Site(s). Biochemistry (2005)

Release Date

2005-01-18

Peptides

Hypothetical protein yxaG: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hypothetical protein yxaG