SMTL ID : 1y4m.2 (1 other biounit)

Crystal structure of human endogenous retrovirus HERV-FRD envelope protein (syncitin-2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-12-mer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: V.23, N.26 Chain B: V.23, N.26 Chain C: V.23, N.26 Ligand excluded by PLIP CL.2: 6 residues within 4Å: Chain D: V.23, N.26 Chain E: V.23, N.26 Chain F: V.23, N.26 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain G: V.23, N.26 Chain H: V.23, N.26 Chain I: V.23, N.26 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain J: V.23, N.26 Chain K: V.23, N.26 Chain L: V.23, N.26 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Renard, M. et al., Crystal structure of a pivotal domain of human syncytin-2, a 40 million years old endogenous retrovirus fusogenic envelope gene captured by primates. J.Mol.Biol. (2005)

Release Date

2005-11-15

Peptides

HERV-FRD_6p24.1 provirus ancestral Env polyprotein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

HERV-FRD_6p24.1 provirus ancestral Env polyprotein

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