SMTL ID : 1y53.1

Crystal structure of bacterial expressed avidin related protein 4 (AVR4) C122S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-tetramer

Ligands

12 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 5 residues within 4Å: Chain A: W.68, T.75, F.77, W.95, L.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.95 FMT.2: 6 residues within 4Å: Chain A: A.38, D.39, W.68, F.70, S.71, S.73 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.39, A:S.71, A:S.71, A:S.73 Water bridges: A:N.40 FMT.3: 4 residues within 4Å: Chain A: H.54, K.55, R.56 Chain B: H.67 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.55, A:R.56, A:R.56, A:R.56 Water bridges: A:A.57 FMT.4: 5 residues within 4Å: Chain B: W.68, T.75, F.77, W.95, L.97 1 PLIP interactions: 1 interactions with chain B Water bridges: B:T.35 FMT.5: 5 residues within 4Å: Chain B: A.38, D.39, W.68, F.70, S.71 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.39, B:S.71, B:S.71, B:S.73 Water bridges: B:N.40 FMT.6: 3 residues within 4Å: Chain B: V.101, N.102, Y.106 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.102 FMT.7: 5 residues within 4Å: Chain C: W.68, T.75, F.77, W.95, L.97 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.75, C:W.95 FMT.8: 6 residues within 4Å: Chain C: A.38, D.39, W.68, F.70, S.71, S.73 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:D.39, C:S.71, C:S.71, C:S.73 Water bridges: C:D.39, C:N.40 FMT.9: 4 residues within 4Å: Chain C: H.54, K.55, R.56 Chain D: H.67 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.55, C:R.56, C:R.56, C:R.56 Water bridges: C:A.57 FMT.10: 5 residues within 4Å: Chain D: W.68, T.75, F.77, W.95, L.97 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:T.75 Water bridges: D:Y.33 FMT.11: 5 residues within 4Å: Chain D: A.38, D.39, W.68, F.70, S.71 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:D.39, D:S.71, D:S.71, D:S.73 Water bridges: D:D.39, D:N.40 FMT.12: 3 residues within 4Å: Chain D: V.101, N.102, Y.106 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eisenberg-Domovich, Y. et al., High-resolution crystal structure of an avidin-related protein: insight into high-affinity biotin binding and protein stability. Acta Crystallogr.,Sect.D (2005)

Release Date

2005-05-24

Peptides

Avidin-related protein 4/5: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

B
Y

C
X

D
Y

Avidin-related protein 4/5

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