SMTL ID : 1y63.1

Initial crystal structural analysis of a probable kinase from Leishmania major Friedlin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 2 residues within 4Å: Chain A: T.24 Ligands: ADP.16 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.24, H2O.1, H2O.1, H2O.1, H2O.1 MN.2: 2 residues within 4Å: Chain A: E.28, H.39 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.28, A:H.39, H2O.1, H2O.2, H2O.2, H2O.2 MN.3: 2 residues within 4Å: Chain A: E.66, D.70 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.70, H2O.4, H2O.5, H2O.6, H2O.6 MN.4: 1 residues within 4Å: Chain A: E.125 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.125, H2O.5, H2O.5 MN.5: 2 residues within 4Å: Chain A: E.98, A.147 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.98, A:A.147, H2O.1 MN.6: 4 residues within 4Å: Chain A: Q.38, S.82, R.83, H.86 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:S.82, A:R.83, A:H.86 MN.7: 3 residues within 4Å: Chain A: Y.123, K.127, N.131 No protein-ligand interaction detected (PLIP) MN.8: 3 residues within 4Å: Chain A: I.64, Y.90, H.91 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:Y.90

5 x BR: BROMIDE ION(Non-covalent)

BR.9: 2 residues within 4Å: Chain A: Y.90, H.91 Ligand excluded by PLIP BR.10: 2 residues within 4Å: Chain A: T.160, L.161 Ligand excluded by PLIP BR.11: 2 residues within 4Å: Chain A: L.34, D.35 Ligand excluded by PLIP BR.12: 2 residues within 4Å: Chain A: L.40, E.41 Ligand excluded by PLIP BR.13: 5 residues within 4Å: Chain A: L.118, Y.123, K.127, R.128, N.131 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.14: 1 residues within 4Å: Chain A: E.94 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.94 NA.15: 1 residues within 4Å: Chain A: D.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.146

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.16: 15 residues within 4Å: Chain A: T.18, P.19, G.20, T.21, G.22, K.23, T.24, S.25, R.117, N.158, D.159, T.160, L.161, M.164 Ligands: MN.1 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:T.18, A:G.20, A:T.21, A:T.21, A:G.22, A:K.23, A:T.24, A:S.25, A:S.25, A:R.117, A:N.158, A:T.160 Water bridges: A:K.23, A:T.24, A:T.24, A:T.24, A:D.89, A:R.121 Salt bridges: A:K.23 pi-Cation interactions: A:R.117, A:R.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robien, M.A. et al., Crystal structural analysis of a probable kinase from Leishmania major Friedlin. To be Published

Release Date

2005-01-04

Peptides

Lmaj004144AAA protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lmaj004144AAA protein