SMTL ID : 1y6f.2 (1 other biounit)

alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 19 residues within 4Å: Chain B: G.16, C.17, G.18, K.21, R.49, S.52, H.53, R.207, W.211, K.212, C.277, Y.278, N.280, M.283, E.309, Y.310, T.311, E.314 Ligands: GOL.2 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:G.18, B:R.49, B:S.52, B:Y.278, B:Y.278, B:Y.278, B:N.280, B:N.280, B:E.309, B:Y.310, B:T.311, B:E.314 Water bridges: B:K.212, B:K.212 Salt bridges: B:R.207, B:K.212, B:K.212 pi-Stacking: B:Y.278

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain B: G.18, H.117, H.143, P.179, E.309 Ligands: UDP.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.117, B:E.309 GOL.3: 5 residues within 4Å: Chain B: K.298, L.299, N.300, W.325, S.327 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.298, B:L.299, B:S.327

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 6 residues within 4Å: Chain B: R.239, S.240, F.243, K.247, Y.253, Y.255 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.240, B:S.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lariviere, L. et al., Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase. J.Mol.Biol. (2005)

Release Date

2005-08-30

Peptides

DNA alpha-glucosyltransferase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
B

DNA alpha-glucosyltransferase

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