SMTL ID : 1y7u.1

Crystal Structure of Acyl-Coa hydrolase from Bacillus cereus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: T.14, A.15, N.16, D.140, E.144 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.144 CA.8: 5 residues within 4Å: Chain D: T.14, A.15, N.16, D.140, E.144 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:E.144

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: P.75, R.77, R.113 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.77, A:R.113 SO4.4: 3 residues within 4Å: Chain B: P.75, R.77, R.113 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.77, B:R.113 SO4.6: 3 residues within 4Å: Chain C: P.75, R.77, R.113 4 PLIP interactions: 4 interactions with chain C Water bridges: C:R.113, C:R.113 Salt bridges: C:R.77, C:R.113 SO4.9: 3 residues within 4Å: Chain D: P.75, R.77, R.113 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.77, D:R.113 SO4.11: 3 residues within 4Å: Chain E: P.75, R.77, R.113 2 PLIP interactions: 2 interactions with chain E Salt bridges: E:R.77, E:R.113 SO4.13: 3 residues within 4Å: Chain F: P.75, R.77, R.113 4 PLIP interactions: 4 interactions with chain F Water bridges: F:H.74, F:R.113 Salt bridges: F:R.77, F:R.113

6 x COA: COENZYME A(Non-covalent)

COA.3: 22 residues within 4Å: Chain A: V.63, T.64, A.65, S.66, G.92, R.93, T.94, S.95, T.121, V.123, P.131, R.158, K.162 Chain F: T.36, L.37, I.42, D.71, F.72, L.73, H.74, P.75, V.76 16 PLIP interactions: 6 interactions with chain F, 10 interactions with chain A Hydrophobic interactions: F:P.75, A:V.63 Hydrogen bonds: F:D.71, F:D.71, F:F.72, A:T.64, A:S.66, A:R.93, A:T.94, A:S.95, A:S.95, A:R.158, A:K.162 Water bridges: F:G.39, F:L.73, A:N.129 COA.5: 21 residues within 4Å: Chain B: V.63, T.64, A.65, S.66, G.92, R.93, T.94, S.95, T.121, V.123, P.131, R.158, K.162 Chain E: T.36, L.37, I.42, D.71, F.72, H.74, P.75, V.76 18 PLIP interactions: 14 interactions with chain B, 4 interactions with chain E Hydrogen bonds: B:T.64, B:T.64, B:R.93, B:T.94, B:T.94, B:S.95, B:S.95, B:R.158, B:R.158, E:T.36, E:D.71, E:F.72 Water bridges: B:K.162, B:K.162, B:K.162, B:K.162 Salt bridges: B:K.162 Hydrophobic interactions: E:F.72 COA.7: 21 residues within 4Å: Chain C: V.63, T.64, A.65, S.66, G.92, R.93, T.94, S.95, T.121, V.123, P.131, R.158, K.162 Chain D: T.36, L.37, I.42, D.71, F.72, H.74, P.75, V.76 14 PLIP interactions: 10 interactions with chain C, 4 interactions with chain D Hydrophobic interactions: C:V.63 Hydrogen bonds: C:S.66, C:R.93, C:T.94, C:T.94, C:T.94, C:S.95, C:R.158, C:R.158, D:T.36, D:D.71, D:D.71, D:F.72 Water bridges: C:R.158 COA.10: 22 residues within 4Å: Chain C: T.36, L.37, I.42, D.71, F.72, L.73, H.74, P.75, V.76 Chain D: V.63, T.64, A.65, S.66, G.92, R.93, T.94, S.95, T.121, V.123, P.131, R.158, K.162 16 PLIP interactions: 10 interactions with chain D, 6 interactions with chain C Hydrophobic interactions: D:V.63, C:P.75 Hydrogen bonds: D:T.64, D:S.66, D:R.93, D:T.94, D:S.95, D:S.95, D:R.158, D:K.162, C:T.36, C:D.71, C:F.72 Water bridges: D:N.129, C:G.39, C:L.73 COA.12: 21 residues within 4Å: Chain B: T.36, L.37, I.42, D.71, F.72, H.74, P.75, V.76 Chain E: V.63, T.64, A.65, S.66, G.92, R.93, T.94, S.95, T.121, V.123, P.131, R.158, K.162 18 PLIP interactions: 14 interactions with chain E, 4 interactions with chain B Hydrogen bonds: E:T.64, E:T.64, E:R.93, E:T.94, E:T.94, E:S.95, E:S.95, E:R.158, E:R.158, B:D.71, B:D.71, B:F.72 Water bridges: E:K.162, E:K.162, E:K.162, E:K.162 Salt bridges: E:K.162 Hydrophobic interactions: B:F.72 COA.14: 21 residues within 4Å: Chain A: T.36, L.37, I.42, D.71, F.72, H.74, P.75, V.76 Chain F: V.63, T.64, A.65, S.66, G.92, R.93, T.94, S.95, T.121, V.123, P.131, R.158, K.162 11 PLIP interactions: 9 interactions with chain F, 2 interactions with chain A Hydrophobic interactions: F:V.63 Hydrogen bonds: F:S.66, F:R.93, F:T.94, F:T.94, F:S.95, F:R.158, F:R.158, A:D.71, A:F.72 Water bridges: F:R.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Acyl-CoA hydrolase from Bacillus cereus. To be Published

Release Date

2005-01-25

Peptides

Acyl-CoA hydrolase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Acyl-CoA hydrolase