SMTL ID : 1y80.1

Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x B1M: CO-5-METHOXYBENZIMIDAZOLYLCOBAMIDE(Non-covalent)

B1M.1: 24 residues within 4Å: Chain A: G.98, D.99, L.100, H.101, D.102, I.103, G.104, L.107, V.108, G.144, M.145, S.146, L.148, L.149, T.150, I.175, G.177, G.178, A.179, A.195, P.196, D.197, A.198, A.201 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:V.108, A:L.148, A:L.149, A:A.201 Hydrogen bonds: A:D.99, A:L.100, A:H.101, A:D.102, A:D.102, A:I.103, A:G.104, A:T.150, A:T.150, A:G.178, A:A.179, A:A.198 Water bridges: A:T.151 Metal complexes: A:H.101, H2O.3

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 1 residues within 4Å: Chain A: Q.207 No protein-ligand interaction detected (PLIP) UNX.3: 1 residues within 4Å: Chain A: Q.207 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: S.182, Q.183 Ligands: UNX.5 No protein-ligand interaction detected (PLIP) UNX.5: 4 residues within 4Å: Chain A: S.182, Q.183, D.184 Ligands: UNX.4 No protein-ligand interaction detected (PLIP) UNX.6: 1 residues within 4Å: Chain A: K.136 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z.-J. et al., Structure of a corrinoid (factor IIIm)-binding protein from Moorella thermoacetica. To be published

Release Date

2005-01-25

Peptides

Predicted cobalamin binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Predicted cobalamin binding protein