SMTL ID : 1y89.1

Crystal Structure of devB protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.70, H.144, R.173 Ligands: PO4.3 12 PLIP interactions: 12 interactions with chain A Water bridges: A:D.68, A:R.70, A:R.70, A:R.70, A:N.80, A:H.144, A:H.144, A:H.166, A:R.173 Salt bridges: A:R.70, A:H.144, A:R.173 PO4.2: 5 residues within 4Å: Chain A: G.38, S.39, T.40, P.41, K.196 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.39, A:T.40, A:T.40 Water bridges: A:T.40, A:L.192, A:L.192, A:K.196, A:K.196, A:K.196 Salt bridges: A:K.196 PO4.3: 5 residues within 4Å: Chain A: G.140, A.141, D.142, H.144 Ligands: PO4.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:A.141, A:D.142 Water bridges: A:V.139, A:H.144, A:H.144, A:H.144, A:K.196 Salt bridges: A:H.144 PO4.5: 5 residues within 4Å: Chain B: R.70, H.144, H.166, R.173 Ligands: PO4.7 7 PLIP interactions: 7 interactions with chain B Water bridges: B:D.68, B:R.70, B:R.70, B:R.173 Salt bridges: B:R.70, B:H.144, B:R.173 PO4.6: 5 residues within 4Å: Chain B: G.38, S.39, T.40, P.41, K.196 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.39, B:T.40, B:T.40, B:T.40 Water bridges: B:V.139, B:L.192, B:K.196, B:K.196, B:K.196 Salt bridges: B:K.196 PO4.7: 5 residues within 4Å: Chain B: G.140, A.141, D.142, H.144 Ligands: PO4.5 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:A.141, B:D.142 Water bridges: B:D.142, B:D.142, B:H.166 Salt bridges: B:H.144

2 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.4: 5 residues within 4Å: Chain A: D.20, A.23, Y.24, Q.27, R.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.186 Water bridges: A:D.20, A:R.186 PE5.9: 10 residues within 4Å: Chain A: A.235, K.236, I.237, A.238 Chain B: I.203, H.204, T.205, T.206, P.207 Ligands: 2PE.8 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:A.235 Water bridges: B:A.208

1 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.8: 17 residues within 4Å: Chain A: H.4, I.6, V.200, I.203, H.204, W.227, I.237 Chain B: H.4, I.6, V.200, I.203, H.204, W.227, L.229, I.237 Ligands: PE5.9, PEG.10 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.10: 8 residues within 4Å: Chain A: H.204, T.205, T.206, P.207 Chain B: A.235, I.237, A.238 Ligands: 2PE.8 1 PLIP interactions: 1 interactions with chain A Water bridges: A:A.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lazarski, K. et al., Crystal Structure of devB protein. To be Published

Release Date

2005-01-25

Peptides

devB protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

devB protein