SMTL ID : 1y9e.1

Crystal structure of Bacillus subtilis protein yhfP with NAD bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 10 residues within 4Å: Chain A: L.137, R.141, G.270, I.271, D.272, C.276, P.277 Chain D: Y.239, G.240, G.265 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.272, A:D.272 Water bridges: A:R.141 NAD.2: 9 residues within 4Å: Chain B: L.137, R.141, G.270, I.271, D.272, C.276, P.277 Chain E: Y.239, G.265 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.272, B:D.272 Water bridges: B:R.141, B:R.141 NAD.3: 10 residues within 4Å: Chain C: L.137, R.141, G.270, I.271, D.272, C.276, P.277 Chain F: Y.239, G.240, G.265 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain F Hydrogen bonds: C:D.272, C:D.272, F:Y.239 Water bridges: C:R.141 NAD.4: 8 residues within 4Å: Chain A: N.145, Y.239, G.240, G.265 Chain D: L.137, R.141, G.270, D.272 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.141, D:D.272, D:D.272, A:Y.239 NAD.5: 8 residues within 4Å: Chain B: Y.239, G.240, G.265 Chain E: R.141, G.270, D.272, C.276, P.277 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:D.272, E:D.272 Water bridges: E:R.141 NAD.6: 8 residues within 4Å: Chain C: Y.239, G.240, G.265 Chain F: L.137, R.141, G.270, I.271, D.272 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain F Hydrogen bonds: C:Y.239, C:Y.239, F:D.272 Water bridges: F:R.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Min, T. et al., The crystal structure of hypothetical protein yhfP from Bacillus subtilis. To be Published

Release Date

2004-12-21

Peptides

hypothetical protein yhfP: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

hypothetical protein yhfP

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