SMTL ID : 1ya7.1

Implications for interactions of proteasome with PAN and PA700 from the 1.9 A structure of a proteasome-11S activator complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-14-14-14-mer

Ligands

42 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: E.110, K.114 Chain B: S.63, I.64, E.65, Q.68 Chain H: R.79 Ligand excluded by PLIP SO4.2: 7 residues within 4Å: Chain B: E.110, K.114 Chain C: S.63, I.64, E.65, Q.68 Chain I: R.79 Ligand excluded by PLIP SO4.3: 7 residues within 4Å: Chain C: E.110, K.114 Chain D: S.63, I.64, E.65, Q.68 Chain J: R.79 Ligand excluded by PLIP SO4.4: 6 residues within 4Å: Chain D: E.110, K.114 Chain E: S.63, E.65, Q.68 Chain K: R.79 Ligand excluded by PLIP SO4.5: 7 residues within 4Å: Chain E: E.110, K.114 Chain F: S.63, I.64, E.65, Q.68 Chain L: R.79 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain F: E.110, K.114 Chain G: S.63, I.64, E.65, Q.68 Chain M: R.79 Ligand excluded by PLIP SO4.7: 7 residues within 4Å: Chain A: S.63, I.64, E.65, Q.68 Chain G: E.110, K.114 Chain N: R.79 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain H: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain A: Y.103, R.115 Chain H: Q.77, R.78 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain I: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.12: 4 residues within 4Å: Chain B: Y.103, R.115 Chain I: Q.77, R.78 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain J: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain C: Y.103, R.115 Chain J: Q.77, R.78 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain K: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain D: Y.103, R.115 Chain K: R.78 Ligand excluded by PLIP SO4.20: 5 residues within 4Å: Chain L: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain E: Y.103, R.115 Chain L: R.78 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain M: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain F: Y.103, R.115 Chain M: Q.77, R.78 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain N: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain G: Y.103, R.115 Chain N: R.78 Ligand excluded by PLIP SO4.29: 7 residues within 4Å: Chain 2: R.79 Chain V: E.110, K.114 Chain W: S.63, I.64, E.65, Q.68 Ligand excluded by PLIP SO4.30: 7 residues within 4Å: Chain 3: R.79 Chain W: E.110, K.114 Chain X: S.63, I.64, E.65, Q.68 Ligand excluded by PLIP SO4.31: 7 residues within 4Å: Chain 4: R.79 Chain X: E.110, K.114 Chain Y: S.63, I.64, E.65, Q.68 Ligand excluded by PLIP SO4.32: 6 residues within 4Å: Chain 5: R.79 Chain Y: E.110, K.114 Chain Z: S.63, E.65, Q.68 Ligand excluded by PLIP SO4.33: 7 residues within 4Å: Chain 0: S.63, I.64, E.65, Q.68 Chain 6: R.79 Chain Z: E.110, K.114 Ligand excluded by PLIP SO4.34: 7 residues within 4Å: Chain 0: E.110, K.114 Chain 1: S.63, I.64, E.65, Q.68 Chain 7: R.79 Ligand excluded by PLIP SO4.35: 7 residues within 4Å: Chain 1: E.110, K.114 Chain 8: R.79 Chain V: S.63, I.64, E.65, Q.68 Ligand excluded by PLIP SO4.36: 5 residues within 4Å: Chain 2: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.37: 4 residues within 4Å: Chain 2: Q.77, R.78 Chain V: Y.103, R.115 Ligand excluded by PLIP SO4.39: 5 residues within 4Å: Chain 3: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.40: 4 residues within 4Å: Chain 3: Q.77, R.78 Chain W: Y.103, R.115 Ligand excluded by PLIP SO4.42: 5 residues within 4Å: Chain 4: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.43: 4 residues within 4Å: Chain 4: Q.77, R.78 Chain X: Y.103, R.115 Ligand excluded by PLIP SO4.45: 5 residues within 4Å: Chain 5: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.46: 3 residues within 4Å: Chain 5: R.78 Chain Y: Y.103, R.115 Ligand excluded by PLIP SO4.48: 5 residues within 4Å: Chain 6: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.49: 3 residues within 4Å: Chain 6: R.78 Chain Z: Y.103, R.115 Ligand excluded by PLIP SO4.51: 5 residues within 4Å: Chain 7: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.52: 4 residues within 4Å: Chain 0: Y.103, R.115 Chain 7: Q.77, R.78 Ligand excluded by PLIP SO4.54: 5 residues within 4Å: Chain 8: T.9, A.54, G.55, G.136, S.137 Ligand excluded by PLIP SO4.55: 3 residues within 4Å: Chain 1: Y.103, R.115 Chain 8: R.78 Ligand excluded by PLIP

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.10: 4 residues within 4Å: Chain H: Q.61, V.64, R.65, K.68 6 PLIP interactions: 4 interactions with chain H, 2 interactions with chain I Hydrogen bonds: H:R.65, H:K.68 Water bridges: H:Q.61, H:K.68, I:E.85, I:T.89 GOL.13: 4 residues within 4Å: Chain I: Q.61, V.64, R.65, K.68 3 PLIP interactions: 1 interactions with chain J, 2 interactions with chain I Water bridges: J:E.85 Hydrogen bonds: I:R.65, I:K.68 GOL.16: 5 residues within 4Å: Chain J: F.43, Q.61, V.64, R.65, K.68 3 PLIP interactions: 3 interactions with chain J Hydrogen bonds: J:R.65, J:K.68 Water bridges: J:Q.61 GOL.19: 4 residues within 4Å: Chain K: Q.61, V.64, R.65, K.68 3 PLIP interactions: 3 interactions with chain K Hydrogen bonds: K:R.65, K:K.68 Water bridges: K:Q.61 GOL.22: 4 residues within 4Å: Chain L: F.43, Q.61, R.65, K.68 2 PLIP interactions: 2 interactions with chain L Hydrogen bonds: L:R.65, L:K.68 GOL.25: 4 residues within 4Å: Chain M: Q.61, V.64, R.65, K.68 4 PLIP interactions: 4 interactions with chain M Hydrogen bonds: M:R.65, M:K.68 Water bridges: M:Q.61, M:Q.61 GOL.28: 5 residues within 4Å: Chain N: F.43, Q.61, V.64, R.65, K.68 4 PLIP interactions: 4 interactions with chain N Hydrogen bonds: N:R.65, N:K.68 Water bridges: N:Q.61, N:Q.61 GOL.38: 4 residues within 4Å: Chain 2: Q.61, V.64, R.65, K.68 5 PLIP interactions: 4 interactions with chain 2, 1 interactions with chain 3 Hydrogen bonds: 2:R.65, 2:K.68 Water bridges: 2:Q.61, 2:K.68, 3:T.89 GOL.41: 4 residues within 4Å: Chain 3: Q.61, V.64, R.65, K.68 2 PLIP interactions: 2 interactions with chain 3 Hydrogen bonds: 3:R.65, 3:K.68 GOL.44: 5 residues within 4Å: Chain 4: F.43, Q.61, V.64, R.65, K.68 3 PLIP interactions: 3 interactions with chain 4 Hydrogen bonds: 4:R.65, 4:K.68 Water bridges: 4:Q.61 GOL.47: 4 residues within 4Å: Chain 5: Q.61, V.64, R.65, K.68 3 PLIP interactions: 3 interactions with chain 5 Hydrogen bonds: 5:R.65, 5:K.68 Water bridges: 5:Q.61 GOL.50: 4 residues within 4Å: Chain 6: F.43, Q.61, R.65, K.68 2 PLIP interactions: 2 interactions with chain 6 Hydrogen bonds: 6:R.65, 6:K.68 GOL.53: 4 residues within 4Å: Chain 7: Q.61, V.64, R.65, K.68 4 PLIP interactions: 4 interactions with chain 7 Hydrogen bonds: 7:R.65, 7:K.68 Water bridges: 7:Q.61, 7:Q.61 GOL.56: 5 residues within 4Å: Chain 8: F.43, Q.61, V.64, R.65, K.68 4 PLIP interactions: 4 interactions with chain 8 Hydrogen bonds: 8:R.65, 8:K.68 Water bridges: 8:Q.61, 8:Q.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forster, A. et al., The 1.9 A structure of a proteasome-11S activator complex and implications for proteasome-PAN/PA700 interactions. Mol.Cell (2005)

Release Date

2005-07-26

Peptides

Proteasome alpha subunit: ABCDEFGVWXYZ01
Proteasome beta subunit: HIJKLMN2345678
proteasome activator protein PA26: OPQRSTU9abcdef

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

V
A

W
B

X
C

Y
D

Z
E

0
F

1
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

2
H

3
I

4
J

5
K

6
L

7
M

8
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

9
O

a
P

b
Q

c
R

d
S

e
T

f
U

Proteasome alpha subunit

Proteasome beta subunit

proteasome activator protein PA26

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